Variant report

Variant	rs73300987
Chromosome Location	chr10:50273792-50273793
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50273046..50275272-chr10:50277935..50280006,2	MCF-7	breast:
2	chr10:50273772..50275700-chr10:50280541..50282052,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10857445	0.86[EUR][1000 genomes]
rs10857447	0.86[EUR][1000 genomes]
rs12253910	0.86[EUR][1000 genomes]
rs12257188	1.00[EUR][1000 genomes]
rs17009530	1.00[EUR][1000 genomes]
rs17009562	1.00[EUR][1000 genomes]
rs17009596	0.86[EUR][1000 genomes]
rs17009606	0.86[EUR][1000 genomes]
rs17011919	1.00[AMR][1000 genomes]
rs17451560	1.00[EUR][1000 genomes]
rs57374856	1.00[EUR][1000 genomes]
rs58131680	0.86[EUR][1000 genomes]
rs6537509	0.86[EUR][1000 genomes]
rs6537510	0.86[EUR][1000 genomes]
rs7075088	1.00[EUR][1000 genomes]
rs73300958	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73302712	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73302798	1.00[AMR][1000 genomes]
rs73306720	1.00[EUR][1000 genomes]
rs73306721	1.00[EUR][1000 genomes]
rs73306722	1.00[EUR][1000 genomes]
rs73306725	1.00[EUR][1000 genomes]
rs7394346	0.86[EUR][1000 genomes]
rs7909019	1.00[EUR][1000 genomes]
rs7911808	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7912808	0.86[EUR][1000 genomes]
rs7913102	1.00[EUR][1000 genomes]
rs7922135	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831866	chr10:50165180-50335276	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50222800-50279000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr10:50232400-50279200	Weak transcription	Brain Hippocampus Middle	brain
3	chr10:50243800-50278800	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr10:50247000-50282600	Weak transcription	Brain Angular Gyrus	brain
5	chr10:50254400-50278800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr10:50266600-50289400	Weak transcription	Colonic Mucosa	Colon
7	chr10:50266800-50278600	Weak transcription	Colon Smooth Muscle	Colon
8	chr10:50267200-50288400	Weak transcription	NHLF	lung
9	chr10:50267600-50276400	Weak transcription	Left Ventricle	heart
10	chr10:50267800-50276400	Weak transcription	Right Atrium	heart
11	chr10:50270600-50284200	Weak transcription	Fetal Intestine Large	intestine
12	chr10:50270800-50279600	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr10:50271200-50279400	Weak transcription	Liver	Liver
14	chr10:50271400-50273800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr10:50271400-50273800	Strong transcription	Fetal Stomach	stomach
16	chr10:50271400-50274200	Strong transcription	Fetal Lung	lung
17	chr10:50271600-50273800	Strong transcription	Aorta	Aorta
18	chr10:50271600-50273800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr10:50271600-50285200	Weak transcription	Duodenum Mucosa	Duodenum
20	chr10:50271800-50273800	Strong transcription	Stomach Smooth Muscle	stomach
21	chr10:50272000-50278800	Weak transcription	HSMMtube	muscle
22	chr10:50272200-50279200	Weak transcription	Adipose Nuclei	Adipose
23	chr10:50272200-50279600	Weak transcription	Fetal Intestine Small	intestine
24	chr10:50272200-50283200	Weak transcription	Brain Anterior Caudate	brain
25	chr10:50272400-50279800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr10:50272400-50283000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr10:50272600-50275400	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr10:50272600-50276200	Weak transcription	Right Ventricle	heart
29	chr10:50272600-50276600	Weak transcription	K562	blood
30	chr10:50272600-50278600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr10:50272600-50279600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr10:50272600-50294200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr10:50272800-50274000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr10:50273400-50273800	Genic enhancers	Fetal Muscle Leg	muscle
35	chr10:50273600-50273800	Genic enhancers	Fetal Muscle Trunk	muscle
36	chr10:50273600-50273800	Genic enhancers	Ovary	ovary
37	chr10:50273600-50279600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr10:50273600-50289800	Weak transcription	NHDF-Ad	bronchial

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