Variant report

Variant	rs73300958
Chromosome Location	chr10:50254096-50254097
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17011919	1.00[AMR][1000 genomes]
rs73300987	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73302712	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73302798	1.00[AMR][1000 genomes]
rs7911808	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831866	chr10:50165180-50335276	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50222800-50279000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr10:50223000-50254200	Weak transcription	NHDF-Ad	bronchial
3	chr10:50224400-50258200	Weak transcription	Brain Anterior Caudate	brain
4	chr10:50232400-50279200	Weak transcription	Brain Hippocampus Middle	brain
5	chr10:50232800-50255400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr10:50233000-50266000	Weak transcription	Colon Smooth Muscle	Colon
7	chr10:50233800-50261400	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr10:50233800-50261400	Weak transcription	Spleen	Spleen
9	chr10:50234000-50254200	Weak transcription	Left Ventricle	heart
10	chr10:50241600-50263200	Weak transcription	NHLF	lung
11	chr10:50242400-50258000	Weak transcription	Fetal Kidney	kidney
12	chr10:50242400-50259200	Weak transcription	Brain Substantia Nigra	brain
13	chr10:50243400-50261200	Weak transcription	Lung	lung
14	chr10:50243800-50278800	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr10:50245400-50258200	Weak transcription	Osteobl	bone
16	chr10:50245600-50264200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr10:50245800-50257800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr10:50247000-50259000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr10:50247000-50282600	Weak transcription	Brain Angular Gyrus	brain
20	chr10:50247800-50255000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr10:50247800-50271600	Weak transcription	Fetal Intestine Small	intestine
22	chr10:50248000-50255000	Weak transcription	Right Ventricle	heart
23	chr10:50249200-50258000	Weak transcription	Liver	Liver
24	chr10:50250400-50255000	Weak transcription	Fetal Stomach	stomach
25	chr10:50250600-50255000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr10:50251000-50255200	Weak transcription	HSMMtube	muscle
27	chr10:50251200-50254200	Weak transcription	Ovary	ovary
28	chr10:50251200-50257800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr10:50251600-50255800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr10:50252200-50261200	Weak transcription	Psoas Muscle	Psoas
31	chr10:50252400-50257000	Weak transcription	Aorta	Aorta
32	chr10:50253400-50257000	Strong transcription	Stomach Smooth Muscle	stomach
33	chr10:50253600-50254200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
34	chr10:50253600-50255800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr10:50253600-50256400	Strong transcription	Fetal Muscle Leg	muscle
36	chr10:50253600-50257000	Strong transcription	Fetal Muscle Trunk	muscle
37	chr10:50253800-50255600	Strong transcription	Adipose Nuclei	Adipose
38	chr10:50253800-50256800	Strong transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links