Variant report

Variant	rs7394346
Chromosome Location	chr10:50425802-50425803
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:50425679..50427944-chr10:50429603..50431327,2	MCF-7	breast:
2	chr10:50378923..50381166-chr10:50424445..50426719,2	K562	blood:
3	chr10:50415216..50419183-chr10:50424898..50429139,5	K562	blood:
4	chr10:50420366..50424495-chr10:50424972..50428260,6	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10745252	1.00[ASN][1000 genomes]
rs10776546	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10857443	1.00[ASN][1000 genomes]
rs10857445	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10857447	1.00[EUR][1000 genomes]
rs11593489	1.00[ASN][1000 genomes]
rs12257188	0.86[EUR][1000 genomes]
rs17009530	0.86[EUR][1000 genomes]
rs17009562	0.86[EUR][1000 genomes]
rs17009596	1.00[EUR][1000 genomes]
rs17009606	1.00[EUR][1000 genomes]
rs17451560	0.86[EUR][1000 genomes]
rs2002392	1.00[ASN][1000 genomes]
rs2377950	1.00[ASN][1000 genomes]
rs2377951	1.00[ASN][1000 genomes]
rs2377952	1.00[ASN][1000 genomes]
rs2377985	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2377987	1.00[ASN][1000 genomes]
rs2377991	1.00[ASN][1000 genomes]
rs2377992	1.00[ASN][1000 genomes]
rs2889807	1.00[ASN][1000 genomes]
rs4514329	1.00[ASN][1000 genomes]
rs4838372	1.00[ASN][1000 genomes]
rs4838465	1.00[ASN][1000 genomes]
rs57374856	0.86[EUR][1000 genomes]
rs58131680	1.00[EUR][1000 genomes]
rs6537509	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6537510	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7075088	0.86[EUR][1000 genomes]
rs7094605	1.00[ASN][1000 genomes]
rs73300987	0.86[EUR][1000 genomes]
rs73306720	0.86[EUR][1000 genomes]
rs73306721	0.86[EUR][1000 genomes]
rs73306722	0.86[EUR][1000 genomes]
rs73306725	0.86[EUR][1000 genomes]
rs7893648	1.00[ASN][1000 genomes]
rs7906560	1.00[ASN][1000 genomes]
rs7909019	0.86[EUR][1000 genomes]
rs7912808	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7913102	0.86[EUR][1000 genomes]
rs7922135	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7923767	1.00[ASN][1000 genomes]
rs9645532	1.00[ASN][1000 genomes]
rs9645533	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50421600-50431400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:50422000-50429000	Weak transcription	Left Ventricle	heart
3	chr10:50425000-50427800	Enhancers	K562	blood
4	chr10:50425600-50426000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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