Variant report
| Variant | rs2377987 |
|---|---|
| Chromosome Location | chr10:50445299-50445300 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:50433140..50435139-chr10:50443341..50445779,2 | K562 | blood: | |
| 2 | chr10:50443853..50446189-chr10:50448741..50451708,2 | K562 | blood: | |
| 3 | chr10:50445084..50446757-chr10:50448279..50449919,2 | K562 | blood: | |
| 4 | chr10:50442326..50444240-chr10:50444884..50447083,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10745252 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10776546 | 1.00[ASN][1000 genomes] |
| rs10857443 | 1.00[ASN][1000 genomes] |
| rs10857445 | 1.00[TSI][hapmap];1.00[ASN][1000 genomes] |
| rs11593489 | 1.00[ASN][1000 genomes] |
| rs2002392 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2377950 | 1.00[ASN][1000 genomes] |
| rs2377951 | 1.00[ASN][1000 genomes] |
| rs2377952 | 1.00[ASN][1000 genomes] |
| rs2377985 | 1.00[ASN][1000 genomes] |
| rs2377991 | 1.00[ASN][1000 genomes] |
| rs2377992 | 1.00[ASN][1000 genomes] |
| rs2889807 | 1.00[ASN][1000 genomes] |
| rs4514329 | 1.00[ASN][1000 genomes] |
| rs4838372 | 1.00[ASN][1000 genomes] |
| rs4838465 | 1.00[ASN][1000 genomes] |
| rs6537509 | 1.00[ASN][1000 genomes] |
| rs6537510 | 1.00[ASN][1000 genomes] |
| rs7094605 | 1.00[ASN][1000 genomes] |
| rs7394346 | 1.00[ASN][1000 genomes] |
| rs7893648 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7906560 | 1.00[ASN][1000 genomes] |
| rs7912808 | 1.00[ASN][1000 genomes] |
| rs7922135 | 1.00[ASN][1000 genomes] |
| rs7923767 | 1.00[ASN][1000 genomes] |
| rs9645532 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9645533 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv895375 | chr10:50306386-51028871 | Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 33 gene(s) | inside rSNPs | diseases |
| 2 | nsv534410 | chr10:50317458-50826916 | Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 30 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs2377987 | C10orf128 | cis | lymphoblastoid | seeQTL |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:50445200-50449800 | Weak transcription | K562 | blood |
