Variant report

Variant	rs41306832
Chromosome Location	chr10:50346069-50346070
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50345704..50347282-chr10:50347596..50350389,2	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs11100995	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11592975	0.96[ASN][1000 genomes]
rs11594275	0.96[ASN][1000 genomes]
rs11594452	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11597983	1.00[ASN][1000 genomes]
rs11598768	0.96[ASN][1000 genomes]
rs12240840	0.93[EUR][1000 genomes]
rs12243520	0.96[ASN][1000 genomes]
rs17782866	0.96[ASN][1000 genomes]
rs1806681	0.83[ASN][1000 genomes]
rs2246796	0.86[ASN][1000 genomes]
rs2377981	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2377982	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2377983	0.96[ASN][1000 genomes]
rs2377984	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3750744	0.96[ASN][1000 genomes]
rs4073200	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4073201	0.96[ASN][1000 genomes]
rs4073202	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4272720	0.86[ASN][1000 genomes]
rs4284329	1.00[ASN][1000 genomes]
rs4345884	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4603218	1.00[EUR][1000 genomes]
rs4838449	0.99[EUR][1000 genomes]
rs4838453	0.83[EUR][1000 genomes]
rs4838455	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4838456	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4838458	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4838460	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4838464	0.83[ASN][1000 genomes]
rs55687538	0.96[ASN][1000 genomes]
rs55783415	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55890352	0.96[ASN][1000 genomes]
rs56235933	0.97[EUR][1000 genomes]
rs56364323	0.96[ASN][1000 genomes]
rs56737365	0.93[ASN][1000 genomes]
rs57286767	0.96[ASN][1000 genomes]
rs59728475	0.96[ASN][1000 genomes]
rs61060205	0.96[ASN][1000 genomes]
rs61848451	0.83[EUR][1000 genomes]
rs7081097	0.96[ASN][1000 genomes]
rs7088006	1.00[ASN][1000 genomes]
rs7094501	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7097375	0.96[ASN][1000 genomes]
rs73302715	0.93[ASN][1000 genomes]
rs73302716	0.93[ASN][1000 genomes]
rs73302780	1.00[ASN][1000 genomes]
rs73302786	0.96[ASN][1000 genomes]
rs7895212	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7924204	0.96[ASN][1000 genomes]
rs9665275	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50340400-50347600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:50342200-50346200	Weak transcription	Left Ventricle	heart
3	chr10:50342200-50347000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:50342200-50349800	Enhancers	Fetal Lung	lung
5	chr10:50343000-50357800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr10:50343800-50346800	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr10:50344000-50346400	Weak transcription	Ovary	ovary
8	chr10:50344000-50347600	Weak transcription	Right Ventricle	heart
9	chr10:50344200-50346200	Weak transcription	NH-A	brain
10	chr10:50344200-50346200	Weak transcription	Osteobl	bone
11	chr10:50344200-50346600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr10:50344200-50346800	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr10:50344200-50346800	Weak transcription	Right Atrium	heart
14	chr10:50344200-50347600	Weak transcription	Esophagus	oesophagus
15	chr10:50344200-50352200	Weak transcription	Fetal Thymus	thymus
16	chr10:50344400-50346200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr10:50344400-50346200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr10:50344400-50346400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr10:50344400-50347400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr10:50344800-50346200	Weak transcription	Adipose Nuclei	Adipose
21	chr10:50345600-50347000	Weak transcription	K562	blood
22	chr10:50345600-50349600	Enhancers	Fetal Muscle Leg	muscle
23	chr10:50345800-50346200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr10:50345800-50349000	Enhancers	Fetal Stomach	stomach
25	chr10:50345800-50349200	Enhancers	Fetal Muscle Trunk	muscle
26	chr10:50346000-50346800	Enhancers	NHDF-Ad	bronchial

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