Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50355645..50357503-chr10:50357925..50361172,3	K562	blood:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11100995	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11594452	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12240840	0.84[EUR][1000 genomes]
rs2377981	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2377982	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2377984	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs4073200	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4073202	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs41306832	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4345884	0.90[EUR][1000 genomes]
rs4603218	0.91[EUR][1000 genomes]
rs4838449	0.90[EUR][1000 genomes]
rs4838455	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4838456	0.90[EUR][1000 genomes]
rs4838458	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55783415	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56235933	0.88[EUR][1000 genomes]
rs7094501	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7895212	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9665275	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50343000-50357800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:50349600-50357200	Weak transcription	HSMM	muscle
3	chr10:50354400-50358000	Weak transcription	NHDF-Ad	bronchial
4	chr10:50354400-50362000	Weak transcription	K562	blood
5	chr10:50356400-50359200	Enhancers	Fetal Stomach	stomach
6	chr10:50356800-50357000	Weak transcription	Fetal Muscle Leg	muscle
7	chr10:50356800-50358400	Enhancers	HSMMtube	muscle

Quick Search: