Variant report

Variant	rs55783415
Chromosome Location	chr10:50343107-50343108
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50322283..50325786-chr10:50341748..50344745,3	K562	blood:
2	chr10:50343053..50345152-chr10:50372726..50375346,2	K562	blood:

Variant related genes	Relation type
ENSG00000204161	Chromatin interaction
ENSG00000165633	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs11100995	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11592975	0.93[ASN][1000 genomes]
rs11594275	0.93[ASN][1000 genomes]
rs11594452	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11597983	0.97[ASN][1000 genomes]
rs11598768	0.93[ASN][1000 genomes]
rs12240840	0.91[EUR][1000 genomes]
rs12243520	0.93[ASN][1000 genomes]
rs17782866	0.93[ASN][1000 genomes]
rs2246796	0.83[ASN][1000 genomes]
rs2377981	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2377982	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2377983	0.93[ASN][1000 genomes]
rs2377984	0.97[ASN][1000 genomes]
rs3750744	0.93[ASN][1000 genomes]
rs4073200	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4073201	0.93[ASN][1000 genomes]
rs4073202	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs41306832	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4272720	0.83[ASN][1000 genomes]
rs4284329	0.97[ASN][1000 genomes]
rs4345884	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4603218	0.98[EUR][1000 genomes]
rs4838449	0.98[EUR][1000 genomes]
rs4838453	0.81[EUR][1000 genomes]
rs4838455	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4838456	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4838458	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4838460	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55687538	0.93[ASN][1000 genomes]
rs55890352	0.93[ASN][1000 genomes]
rs56235933	0.95[EUR][1000 genomes]
rs56364323	0.93[ASN][1000 genomes]
rs56737365	0.90[ASN][1000 genomes]
rs57286767	0.93[ASN][1000 genomes]
rs59728475	0.93[ASN][1000 genomes]
rs61060205	0.93[ASN][1000 genomes]
rs61848451	0.81[EUR][1000 genomes]
rs7081097	0.93[ASN][1000 genomes]
rs7088006	0.97[ASN][1000 genomes]
rs7094501	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7097375	0.93[ASN][1000 genomes]
rs73302715	0.90[ASN][1000 genomes]
rs73302716	0.90[ASN][1000 genomes]
rs73302780	0.97[ASN][1000 genomes]
rs73302786	0.93[ASN][1000 genomes]
rs7895212	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7924204	0.93[ASN][1000 genomes]
rs9665275	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50324000-50343600	Weak transcription	Right Atrium	heart
2	chr10:50336000-50344200	Enhancers	Fetal Muscle Leg	muscle
3	chr10:50340400-50343800	Weak transcription	K562	blood
4	chr10:50340400-50347600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr10:50341800-50344200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr10:50341800-50344200	Enhancers	Fetal Stomach	stomach
7	chr10:50341800-50344200	Enhancers	Fetal Thymus	thymus
8	chr10:50342000-50344000	Enhancers	Right Ventricle	heart
9	chr10:50342200-50343200	Weak transcription	Fetal Muscle Trunk	muscle
10	chr10:50342200-50343400	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr10:50342200-50343600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr10:50342200-50344600	Enhancers	Primary B cells from cord blood	blood
13	chr10:50342200-50346200	Weak transcription	Left Ventricle	heart
14	chr10:50342200-50347000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr10:50342200-50349800	Enhancers	Fetal Lung	lung
16	chr10:50342400-50344000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr10:50342400-50344400	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr10:50342400-50345400	Enhancers	Primary B cells from peripheral blood	blood
19	chr10:50342600-50344800	Enhancers	Adipose Nuclei	Adipose
20	chr10:50342800-50343200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr10:50342800-50343200	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr10:50342800-50343600	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr10:50342800-50343800	Weak transcription	Dnd41	blood
24	chr10:50343000-50343200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr10:50343000-50343400	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr10:50343000-50344000	Enhancers	Ovary	ovary
27	chr10:50343000-50357800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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