Variant report

Variant	rs73302706
Chromosome Location	chr10:50282548-50282549
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50277084..50281077-chr10:50281316..50285114,4	MCF-7	breast:
2	chr10:50281055..50283973-chr10:50326395..50329291,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10219080	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12243870	0.91[AFR][1000 genomes]
rs1913523	0.83[AMR][1000 genomes]
rs1913525	0.83[AMR][1000 genomes]
rs2246238	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs2254151	0.83[AMR][1000 genomes]
rs2254731	0.83[AMR][1000 genomes]
rs56737365	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7067828	0.88[AFR][1000 genomes]
rs73301000	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73302715	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73302716	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831866	chr10:50165180-50335276	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
2	esv2761593	chr10:50276812-50336129	Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50247000-50282600	Weak transcription	Brain Angular Gyrus	brain
2	chr10:50266600-50289400	Weak transcription	Colonic Mucosa	Colon
3	chr10:50267200-50288400	Weak transcription	NHLF	lung
4	chr10:50270600-50284200	Weak transcription	Fetal Intestine Large	intestine
5	chr10:50271600-50285200	Weak transcription	Duodenum Mucosa	Duodenum
6	chr10:50272200-50283200	Weak transcription	Brain Anterior Caudate	brain
7	chr10:50272400-50283000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr10:50272600-50294200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr10:50273600-50289800	Weak transcription	NHDF-Ad	bronchial
10	chr10:50276600-50288200	Weak transcription	Gastric	stomach
11	chr10:50277400-50284400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr10:50277600-50287200	Weak transcription	K562	blood
13	chr10:50278800-50282800	Strong transcription	HSMMtube	muscle
14	chr10:50279000-50284200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr10:50279600-50284600	Strong transcription	Aorta	Aorta
16	chr10:50279600-50284800	Weak transcription	Liver	Liver
17	chr10:50279600-50284800	Weak transcription	Thymus	Thymus
18	chr10:50279600-50285000	Strong transcription	Adipose Nuclei	Adipose
19	chr10:50279600-50285000	Strong transcription	Fetal Intestine Small	intestine
20	chr10:50279600-50285400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr10:50279600-50289200	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr10:50279800-50283800	Strong transcription	Fetal Lung	lung
23	chr10:50279800-50285600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr10:50279800-50288600	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr10:50280000-50282600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr10:50280000-50282600	Weak transcription	Ovary	ovary
27	chr10:50280000-50282800	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr10:50280000-50283600	Weak transcription	Left Ventricle	heart
29	chr10:50280000-50283800	Weak transcription	Brain Hippocampus Middle	brain
30	chr10:50280000-50284600	Weak transcription	Fetal Thymus	thymus
31	chr10:50280000-50285400	Strong transcription	Fetal Stomach	stomach
32	chr10:50280200-50285400	Strong transcription	Stomach Smooth Muscle	stomach
33	chr10:50280600-50288200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr10:50280600-50288600	Weak transcription	Rectal Smooth Muscle	rectum
35	chr10:50280800-50282600	Weak transcription	Spleen	Spleen
36	chr10:50280800-50283400	Weak transcription	Brain Cingulate Gyrus	brain
37	chr10:50280800-50284000	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr10:50280800-50285200	Weak transcription	Right Atrium	heart
39	chr10:50281000-50283000	Weak transcription	Lung	lung
40	chr10:50281000-50283400	Weak transcription	Brain Substantia Nigra	brain
41	chr10:50281000-50285200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr10:50281400-50283200	Weak transcription	Colon Smooth Muscle	Colon
43	chr10:50281600-50282600	Weak transcription	Right Ventricle	heart
44	chr10:50281600-50285600	Genic enhancers	Fetal Muscle Leg	muscle
45	chr10:50281600-50288400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr10:50281800-50283400	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr10:50282400-50282800	Enhancers	Esophagus	oesophagus
48	chr10:50282400-50285600	Genic enhancers	Fetal Muscle Trunk	muscle
49	chr10:50282400-50289400	Weak transcription	Fetal Kidney	kidney

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