Variant report

Variant	rs10219080
Chromosome Location	chr10:50301013-50301014
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11100991	0.91[AMR][1000 genomes]
rs12243870	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs12258104	0.91[AMR][1000 genomes]
rs12258230	0.91[AMR][1000 genomes]
rs12268209	0.91[AMR][1000 genomes]
rs2246238	0.89[AFR][1000 genomes]
rs4442460	0.91[AMR][1000 genomes]
rs4483511	0.91[AMR][1000 genomes]
rs56737365	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7067828	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7067848	0.91[AMR][1000 genomes]
rs7068517	0.91[AMR][1000 genomes]
rs7077339	0.91[AMR][1000 genomes]
rs7083685	0.91[AMR][1000 genomes]
rs7095186	0.91[AMR][1000 genomes]
rs73301000	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73302706	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73302715	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73302716	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73302759	0.91[AMR][1000 genomes]
rs73304705	0.91[AMR][1000 genomes]
rs73304711	0.91[AMR][1000 genomes]
rs9804303	0.91[AMR][1000 genomes]
rs9804328	0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831866	chr10:50165180-50335276	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
2	esv2761593	chr10:50276812-50336129	Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50290800-50315400	Weak transcription	Fetal Intestine Small	intestine
2	chr10:50292200-50302600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr10:50292200-50311800	Weak transcription	Aorta	Aorta
4	chr10:50293400-50312400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:50294800-50302600	Weak transcription	Brain Angular Gyrus	brain
6	chr10:50295800-50311600	Weak transcription	K562	blood
7	chr10:50296400-50302200	Enhancers	Right Ventricle	heart
8	chr10:50296400-50304000	Genic enhancers	Fetal Muscle Leg	muscle
9	chr10:50297600-50302800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr10:50297600-50303800	Genic enhancers	Fetal Muscle Trunk	muscle
11	chr10:50298400-50302400	Weak transcription	Brain Cingulate Gyrus	brain
12	chr10:50298600-50302200	Weak transcription	Brain Substantia Nigra	brain
13	chr10:50298600-50302400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr10:50298600-50306000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr10:50298600-50306600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr10:50298600-50310400	Weak transcription	Fetal Intestine Large	intestine
17	chr10:50298600-50314400	Weak transcription	NHDF-Ad	bronchial
18	chr10:50298800-50302600	Weak transcription	Brain Hippocampus Middle	brain
19	chr10:50298800-50304200	Weak transcription	Fetal Heart	heart
20	chr10:50299000-50302200	Weak transcription	NHLF	lung
21	chr10:50299000-50312600	Weak transcription	Fetal Lung	lung
22	chr10:50299200-50301600	Weak transcription	Fetal Kidney	kidney
23	chr10:50299200-50303000	Weak transcription	Esophagus	oesophagus
24	chr10:50299200-50303200	Weak transcription	Psoas Muscle	Psoas
25	chr10:50299200-50307600	Weak transcription	Pancreas	Pancrea
26	chr10:50299400-50303600	Weak transcription	Lung	lung
27	chr10:50299600-50307400	Strong transcription	Fetal Stomach	stomach
28	chr10:50299600-50312200	Weak transcription	Colon Smooth Muscle	Colon
29	chr10:50299600-50314400	Weak transcription	HSMMtube	muscle
30	chr10:50300200-50302200	Weak transcription	Right Atrium	heart
31	chr10:50300200-50302400	Weak transcription	Adipose Nuclei	Adipose
32	chr10:50300800-50312400	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr10:50300800-50314600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr10:50301000-50301600	Strong transcription	Stomach Smooth Muscle	stomach
35	chr10:50301000-50302000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr10:50301000-50302200	Weak transcription	Left Ventricle	heart
37	chr10:50301000-50302400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr10:50301000-50302400	Weak transcription	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links