Variant report

Variant	rs12268209
Chromosome Location	chr10:50341830-50341831
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10219080	0.91[AMR][1000 genomes]
rs11100991	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12243870	1.00[AMR][1000 genomes]
rs12258104	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12258230	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2246238	0.82[AMR][1000 genomes]
rs4442460	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4483511	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56737365	0.91[AMR][1000 genomes]
rs61167870	0.84[AFR][1000 genomes]
rs7067828	0.91[AMR][1000 genomes]
rs7067848	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7068517	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7068519	0.85[AFR][1000 genomes]
rs7077339	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7083685	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7095186	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73302715	0.91[AMR][1000 genomes]
rs73302716	0.91[AMR][1000 genomes]
rs73302759	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73304705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73304711	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9804303	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9804328	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50324000-50343600	Weak transcription	Right Atrium	heart
2	chr10:50336000-50344200	Enhancers	Fetal Muscle Leg	muscle
3	chr10:50339800-50342200	Weak transcription	Fetal Lung	lung
4	chr10:50340400-50343800	Weak transcription	K562	blood
5	chr10:50340400-50347600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:50341600-50342800	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr10:50341800-50342200	Enhancers	Fetal Muscle Trunk	muscle
8	chr10:50341800-50342200	Bivalent Enhancer	Placenta	Placenta
9	chr10:50341800-50342200	Enhancers	Left Ventricle	heart
10	chr10:50341800-50342200	Enhancers	Lung	lung
11	chr10:50341800-50342200	Enhancers	Sigmoid Colon	Sigmoid Colon
12	chr10:50341800-50344200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr10:50341800-50344200	Enhancers	Fetal Stomach	stomach
14	chr10:50341800-50344200	Enhancers	Fetal Thymus	thymus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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