Variant report

No.	Distal block	Cell Line	Cell type
1	chr10:50338793..50341624-chr10:50344391..50347108,2	K562	blood:
2	chr10:50338354..50340980-chr10:50380795..50383711,2	K562	blood:
3	chr10:50337758..50340130-chr10:50341015..50343464,2	K562	blood:
4	chr10:50323173..50324677-chr10:50336521..50339264,2	K562	blood:

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10219080	0.91[AMR][1000 genomes]
rs11100991	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12243870	1.00[AMR][1000 genomes]
rs12258104	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12258230	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12268209	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2246238	0.82[AMR][1000 genomes]
rs2725180	0.87[YRI][hapmap]
rs2804933	0.96[YRI][hapmap]
rs2804936	0.96[YRI][hapmap]
rs4442460	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4483511	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56737365	0.91[AMR][1000 genomes]
rs61167870	0.83[AFR][1000 genomes]
rs7067828	0.91[AMR][1000 genomes]
rs7067848	0.91[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7068517	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7068519	0.86[AFR][1000 genomes]
rs7077339	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7095186	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73302715	0.91[AMR][1000 genomes]
rs73302716	0.91[AMR][1000 genomes]
rs73302759	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73304705	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73304711	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9804303	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9804328	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	esv1824894	chr10:50309905-50340304	Genic enhancers Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50324000-50343600	Weak transcription	Right Atrium	heart
2	chr10:50325000-50339400	Weak transcription	Ovary	ovary
3	chr10:50336000-50344200	Enhancers	Fetal Muscle Leg	muscle
4	chr10:50336600-50341800	Weak transcription	Fetal Thymus	thymus
5	chr10:50338000-50339400	Enhancers	Fetal Stomach	stomach
6	chr10:50338000-50340200	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr10:50338400-50339200	Enhancers	HSMMtube	muscle
8	chr10:50338600-50339400	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr10:50338600-50340400	Enhancers	Fetal Muscle Trunk	muscle

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