Variant report

Variant	rs2804933
Chromosome Location	chr10:50370384-50370385
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:50349435..50351722-chr10:50368271..50370648,2	K562	blood:
2	chr10:50350582..50352155-chr10:50369514..50372257,2	K562	blood:
3	chr10:50321508..50325682-chr10:50370316..50373031,3	K562	blood:
4	chr10:50368282..50370394-chr10:50503941..50507857,3	K562	blood:
5	chr10:50364786..50371686-chr10:50371829..50376692,10	K562	blood:
6	chr10:50363975..50366522-chr10:50367488..50370689,4	K562	blood:
7	chr10:50340460..50342159-chr10:50369270..50372220,2	K562	blood:
8	chr10:50340659..50342841-chr10:50368235..50370770,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000172538	Chromatin interaction
ENSG00000165633	Chromatin interaction
ENSG00000177354	Chromatin interaction
ENSG00000236208	Chromatin interaction
ENSG00000204161	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10218995	0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11100988	0.82[JPT][hapmap]
rs12198	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12258104	0.96[YRI][hapmap]
rs12258230	0.95[YRI][hapmap]
rs2002728	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2003044	0.83[CHB][hapmap]
rs2377953	0.89[ASN][1000 genomes]
rs2466744	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2466748	0.91[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2466756	0.82[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2490837	0.85[ASN][1000 genomes]
rs2725180	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2725183	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2725186	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2725187	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2725188	0.83[ASN][1000 genomes]
rs2725192	0.82[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2725193	0.89[ASN][1000 genomes]
rs2725200	0.87[JPT][hapmap]
rs2804931	0.83[CHB][hapmap]
rs2804932	0.83[CHB][hapmap]
rs2804935	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2804936	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2804938	1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2804942	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4317904	0.83[EUR][1000 genomes]
rs4319434	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4319435	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4344406	0.83[JPT][hapmap]
rs4417190	0.83[JPT][hapmap]
rs4421674	0.83[EUR][1000 genomes]
rs4558091	0.87[JPT][hapmap]
rs4620641	0.87[JPT][hapmap]
rs4838446	0.87[JPT][hapmap]
rs4838447	0.83[JPT][hapmap]
rs6537499	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7067848	0.85[YRI][hapmap]
rs7072243	0.87[JPT][hapmap]
rs7073645	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7083685	0.96[YRI][hapmap]
rs7094217	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7095186	0.96[YRI][hapmap]
rs73304793	0.88[ASN][1000 genomes]
rs9418839	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50359000-50382200	Weak transcription	Left Ventricle	heart
2	chr10:50359200-50375400	Weak transcription	Right Atrium	heart
3	chr10:50359400-50373400	Weak transcription	Right Ventricle	heart
4	chr10:50359400-50374000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr10:50362200-50370600	Weak transcription	Spleen	Spleen
6	chr10:50362400-50380600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr10:50365400-50374800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr10:50365400-50374800	Weak transcription	Lung	lung
9	chr10:50366000-50373600	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr10:50366200-50378200	Weak transcription	Stomach Smooth Muscle	stomach
11	chr10:50366800-50372400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr10:50366800-50375400	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr10:50367600-50376200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr10:50367600-50384600	Weak transcription	Dnd41	blood
15	chr10:50368000-50371600	Strong transcription	Primary neutrophils fromperipheralblood	blood
16	chr10:50368000-50375600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr10:50368200-50380800	Weak transcription	Esophagus	oesophagus
18	chr10:50368600-50372600	Weak transcription	Primary B cells from peripheral blood	blood
19	chr10:50368800-50370600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr10:50368800-50370800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr10:50368800-50371000	Strong transcription	Duodenum Mucosa	Duodenum
22	chr10:50369000-50377200	Weak transcription	Brain Angular Gyrus	brain
23	chr10:50369200-50370800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr10:50369400-50370800	Enhancers	NHDF-Ad	bronchial
25	chr10:50369600-50370400	Enhancers	Osteobl	bone
26	chr10:50369600-50371600	Weak transcription	NHLF	lung
27	chr10:50369600-50372400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr10:50369600-50372400	Weak transcription	Brain Hippocampus Middle	brain
29	chr10:50369600-50380400	Weak transcription	Gastric	stomach
30	chr10:50369800-50372400	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr10:50369800-50373200	Weak transcription	Adipose Nuclei	Adipose
32	chr10:50369800-50373600	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr10:50370000-50371400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr10:50370000-50371400	Weak transcription	NH-A	brain
35	chr10:50370000-50372000	Weak transcription	Fetal Thymus	thymus
36	chr10:50370000-50372200	Weak transcription	Fetal Muscle Leg	muscle
37	chr10:50370000-50372400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr10:50370000-50375000	Weak transcription	Brain Substantia Nigra	brain
39	chr10:50370200-50371600	Weak transcription	HSMM	muscle
40	chr10:50370200-50373600	Genic enhancers	K562	blood

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