Variant report

Variant	rs2725188
Chromosome Location	chr10:50356921-50356922
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10218995	0.87[ASN][1000 genomes]
rs2002728	0.81[ASN][1000 genomes]
rs2466744	0.87[ASN][1000 genomes]
rs2725180	0.81[ASN][1000 genomes]
rs2725183	0.81[ASN][1000 genomes]
rs2725186	0.87[ASN][1000 genomes]
rs2725187	0.87[ASN][1000 genomes]
rs2804933	0.83[ASN][1000 genomes]
rs2804936	0.87[ASN][1000 genomes]
rs2804942	0.87[ASN][1000 genomes]
rs4319434	0.88[ASN][1000 genomes]
rs4319435	0.88[ASN][1000 genomes]
rs6537499	0.87[ASN][1000 genomes]
rs7073645	0.88[ASN][1000 genomes]
rs7094217	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50343000-50357800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:50349600-50357200	Weak transcription	HSMM	muscle
3	chr10:50354400-50358000	Weak transcription	NHDF-Ad	bronchial
4	chr10:50354400-50362000	Weak transcription	K562	blood
5	chr10:50356400-50359200	Enhancers	Fetal Stomach	stomach
6	chr10:50356800-50357000	Weak transcription	Fetal Muscle Leg	muscle
7	chr10:50356800-50358400	Enhancers	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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