Variant report

Variant	rs2804936
Chromosome Location	chr10:50365959-50365960
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:50360501..50363437-chr10:50365924..50369669,5	K562	blood:
2	chr10:50351001..50354708-chr10:50363715..50366252,3	K562	blood:
3	chr10:50364786..50371686-chr10:50371829..50376692,10	K562	blood:
4	chr10:50363975..50366522-chr10:50367488..50370689,4	K562	blood:

Variant related genes	Relation type
ENSG00000204161	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10218995	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12198	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12258104	0.96[YRI][hapmap]
rs12258230	0.95[YRI][hapmap]
rs2002728	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2377953	0.85[ASN][1000 genomes]
rs2466744	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2466748	0.92[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2466756	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2490837	0.81[ASN][1000 genomes]
rs2725180	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2725183	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2725186	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2725187	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2725188	0.87[ASN][1000 genomes]
rs2725192	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2725193	0.85[ASN][1000 genomes]
rs2725200	0.83[JPT][hapmap]
rs2804933	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2804935	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2804938	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2804942	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35307207	0.81[ASN][1000 genomes]
rs35351786	0.81[ASN][1000 genomes]
rs4317904	0.82[EUR][1000 genomes]
rs4319434	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4319435	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4421674	0.82[EUR][1000 genomes]
rs4558091	0.83[JPT][hapmap]
rs4620641	0.83[JPT][hapmap]
rs4838446	0.83[JPT][hapmap]
rs6537499	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7067848	0.86[YRI][hapmap]
rs7072243	0.83[JPT][hapmap]
rs7073645	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7083685	0.96[YRI][hapmap]
rs7094217	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7095186	0.96[YRI][hapmap]
rs73304793	0.84[ASN][1000 genomes]
rs9418839	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50359000-50382200	Weak transcription	Left Ventricle	heart
2	chr10:50359200-50375400	Weak transcription	Right Atrium	heart
3	chr10:50359400-50373400	Weak transcription	Right Ventricle	heart
4	chr10:50359400-50374000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr10:50362200-50370600	Weak transcription	Spleen	Spleen
6	chr10:50362400-50380600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr10:50365200-50367600	Enhancers	Dnd41	blood
8	chr10:50365200-50368600	Weak transcription	Adipose Nuclei	Adipose
9	chr10:50365400-50366400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr10:50365400-50366400	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr10:50365400-50374800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr10:50365400-50374800	Weak transcription	Lung	lung
13	chr10:50365600-50366200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr10:50365600-50369400	Weak transcription	Fetal Thymus	thymus
15	chr10:50365800-50366200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr10:50365800-50366400	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr10:50365800-50366600	Weak transcription	K562	blood
18	chr10:50365800-50367200	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr10:50365800-50367200	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr10:50365800-50367600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr10:50365800-50368000	Weak transcription	Primary neutrophils fromperipheralblood	blood

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