Variant report

Variant	rs35307207
Chromosome Location	chr10:50339287-50339288
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10218995	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12198	0.95[ASN][1000 genomes]
rs12771123	0.82[ASN][1000 genomes]
rs2466744	0.82[ASN][1000 genomes]
rs2490836	0.81[ASN][1000 genomes]
rs2490837	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2725186	0.82[ASN][1000 genomes]
rs2725187	0.82[ASN][1000 genomes]
rs2804935	0.91[ASN][1000 genomes]
rs2804936	0.81[ASN][1000 genomes]
rs2804938	0.95[ASN][1000 genomes]
rs2804942	0.82[ASN][1000 genomes]
rs35351786	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4319434	0.84[ASN][1000 genomes]
rs4319435	0.84[ASN][1000 genomes]
rs6537499	0.85[ASN][1000 genomes]
rs7073645	0.84[ASN][1000 genomes]
rs7094217	0.85[ASN][1000 genomes]
rs73304790	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	esv1824894	chr10:50309905-50340304	Genic enhancers Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50324000-50343600	Weak transcription	Right Atrium	heart
2	chr10:50325000-50339400	Weak transcription	Ovary	ovary
3	chr10:50336000-50344200	Enhancers	Fetal Muscle Leg	muscle
4	chr10:50336600-50341800	Weak transcription	Fetal Thymus	thymus
5	chr10:50338000-50339400	Enhancers	Fetal Stomach	stomach
6	chr10:50338000-50340200	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr10:50338600-50339400	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr10:50338600-50340400	Enhancers	Fetal Muscle Trunk	muscle
9	chr10:50339000-50339800	Enhancers	Fetal Lung	lung
10	chr10:50339200-50339400	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
11	chr10:50339200-50340000	Flanking Active TSS	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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