Variant report

Variant	rs2804935
Chromosome Location	chr10:50367977-50367978
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:50360501..50363437-chr10:50365924..50369669,5	K562	blood:
2	chr10:50364786..50371686-chr10:50371829..50376692,10	K562	blood:
3	chr10:50363975..50366522-chr10:50367488..50370689,4	K562	blood:
4	chr10:50343637..50346053-chr10:50366272..50368285,3	K562	blood:

Variant related genes	Relation type
ENSG00000204161	Chromatin interaction
ENSG00000234736	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10218995	0.95[CHB][hapmap]
rs12198	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12255055	0.83[JPT][hapmap]
rs12771123	0.90[ASN][1000 genomes]
rs2002728	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2466744	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2466748	0.92[CEU][hapmap];0.85[CHB][hapmap];0.89[EUR][1000 genomes]
rs2466756	0.84[CHB][hapmap]
rs2490836	0.90[ASN][1000 genomes]
rs2490837	0.99[ASN][1000 genomes]
rs2725180	0.89[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2725183	0.99[EUR][1000 genomes]
rs2725186	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2725187	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2725192	0.84[CHB][hapmap]
rs2804933	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2804936	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2804938	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2804942	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35307207	0.91[ASN][1000 genomes]
rs35351786	0.91[ASN][1000 genomes]
rs4317904	0.82[EUR][1000 genomes]
rs4319434	1.00[CEU][hapmap];0.95[CHB][hapmap];0.96[EUR][1000 genomes]
rs4319435	1.00[CEU][hapmap];0.94[CHB][hapmap];0.96[EUR][1000 genomes]
rs4421674	0.82[EUR][1000 genomes]
rs6537499	0.96[CEU][hapmap];0.95[CHB][hapmap];0.96[EUR][1000 genomes]
rs7073645	1.00[CEU][hapmap];0.95[CHB][hapmap];0.96[EUR][1000 genomes]
rs7094217	1.00[CEU][hapmap];0.95[CHB][hapmap];0.96[EUR][1000 genomes]
rs73304790	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50359000-50382200	Weak transcription	Left Ventricle	heart
2	chr10:50359200-50375400	Weak transcription	Right Atrium	heart
3	chr10:50359400-50373400	Weak transcription	Right Ventricle	heart
4	chr10:50359400-50374000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr10:50362200-50370600	Weak transcription	Spleen	Spleen
6	chr10:50362400-50380600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr10:50365200-50368600	Weak transcription	Adipose Nuclei	Adipose
8	chr10:50365400-50374800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr10:50365400-50374800	Weak transcription	Lung	lung
10	chr10:50365600-50369400	Weak transcription	Fetal Thymus	thymus
11	chr10:50365800-50368000	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr10:50366000-50373600	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr10:50366200-50378200	Weak transcription	Stomach Smooth Muscle	stomach
14	chr10:50366600-50369400	Enhancers	K562	blood
15	chr10:50366600-50369600	Weak transcription	Brain Substantia Nigra	brain
16	chr10:50366800-50368200	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr10:50366800-50369400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr10:50366800-50369400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr10:50366800-50370200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr10:50366800-50372400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr10:50366800-50375400	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr10:50367200-50368800	Weak transcription	Duodenum Mucosa	Duodenum
23	chr10:50367400-50368000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr10:50367400-50369600	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr10:50367600-50368000	Active TSS	Breast Myoepithelial Primary Cells	Breast
26	chr10:50367600-50368200	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr10:50367600-50369200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr10:50367600-50376200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
29	chr10:50367600-50384600	Weak transcription	Dnd41	blood
30	chr10:50367800-50368000	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
31	chr10:50367800-50369400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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