Variant report

Variant	rs2725183
Chromosome Location	chr10:50361760-50361761
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:50360501..50363437-chr10:50365924..50369669,5	K562	blood:
2	chr10:50358294..50360224-chr10:50361427..50364405,2	K562	blood:
3	chr10:50358962..50361872-chr10:50363611..50365233,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10218995	0.90[ASN][1000 genomes]
rs12198	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2002728	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2466744	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2466748	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2725180	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2725186	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2725187	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2725188	0.81[ASN][1000 genomes]
rs2804933	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2804935	0.99[EUR][1000 genomes]
rs2804936	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2804938	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2804942	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4317904	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4319434	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4319435	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4421674	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6537499	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7073645	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7094217	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50354400-50362000	Weak transcription	K562	blood
2	chr10:50358800-50362000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr10:50359000-50382200	Weak transcription	Left Ventricle	heart
4	chr10:50359200-50362000	Weak transcription	HSMM	muscle
5	chr10:50359200-50363600	Weak transcription	Adipose Nuclei	Adipose
6	chr10:50359200-50375400	Weak transcription	Right Atrium	heart
7	chr10:50359400-50364600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr10:50359400-50365200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr10:50359400-50373400	Weak transcription	Right Ventricle	heart
10	chr10:50359400-50374000	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr10:50359600-50362600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr10:50359600-50364600	Weak transcription	Fetal Thymus	thymus
13	chr10:50361400-50361800	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr10:50361400-50362600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr10:50361400-50362600	Enhancers	NHDF-Ad	bronchial
16	chr10:50361400-50362800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr10:50361600-50362600	Enhancers	HSMMtube	muscle

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