Variant report

Variant	rs4421674
Chromosome Location	chr10:50301074-50301075
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs12198	0.80[TSI][hapmap];0.83[EUR][1000 genomes]
rs12244666	0.94[CHB][hapmap]
rs12244748	0.94[CHB][hapmap]
rs12253426	0.94[CHB][hapmap]
rs12255090	0.94[CHB][hapmap]
rs12256777	0.94[CHB][hapmap];0.94[CHD][hapmap]
rs12257242	0.94[CHB][hapmap]
rs12261297	0.94[CHB][hapmap];0.81[ASN][1000 genomes]
rs12269023	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[ASN][1000 genomes]
rs12769361	0.94[CHB][hapmap]
rs12774293	0.94[CHB][hapmap]
rs12776460	0.94[CHB][hapmap];0.94[CHD][hapmap]
rs17011757	0.94[CHB][hapmap];0.97[CHD][hapmap];0.81[ASN][1000 genomes]
rs17700872	0.94[CHB][hapmap]
rs2002728	0.82[EUR][1000 genomes]
rs2137912	0.94[CHB][hapmap];0.94[CHD][hapmap]
rs2137914	0.94[CHB][hapmap]
rs2246463	1.00[CHB][hapmap];0.97[CHD][hapmap];0.92[ASN][1000 genomes]
rs2246673	0.94[CHB][hapmap]
rs2246937	0.94[CHB][hapmap]
rs2250146	0.83[ASN][1000 genomes]
rs2250257	0.87[ASN][1000 genomes]
rs2250349	0.87[ASN][1000 genomes]
rs2264846	0.94[CHB][hapmap]
rs2264847	0.94[CHB][hapmap]
rs2466744	0.85[EUR][1000 genomes]
rs2466748	1.00[YRI][hapmap]
rs2725183	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2725186	0.84[EUR][1000 genomes]
rs2725187	0.84[EUR][1000 genomes]
rs2804933	0.83[EUR][1000 genomes]
rs2804935	0.82[EUR][1000 genomes]
rs2804936	0.82[EUR][1000 genomes]
rs2804938	0.80[TSI][hapmap];0.82[EUR][1000 genomes]
rs2804942	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2943253	0.87[ASN][1000 genomes]
rs2943254	0.83[ASN][1000 genomes]
rs3924984	0.94[CHB][hapmap]
rs3924985	0.94[CHB][hapmap]
rs4128908	1.00[CHB][hapmap];0.97[ASN][1000 genomes]
rs4129035	1.00[ASN][1000 genomes]
rs4240498	1.00[CHB][hapmap];0.90[CHD][hapmap];0.97[ASN][1000 genomes]
rs4317903	1.00[ASN][1000 genomes]
rs4317904	1.00[ASW][hapmap];0.92[CEU][hapmap];0.97[CHD][hapmap];0.82[GIH][hapmap];1.00[LWK][hapmap];0.81[TSI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4319434	0.82[GIH][hapmap];0.80[TSI][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4319435	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4400713	0.94[CHB][hapmap]
rs4402204	0.94[CHB][hapmap]
rs4403731	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4445564	0.84[CHD][hapmap]
rs4468264	0.94[CHB][hapmap]
rs4497319	0.94[CHB][hapmap];0.90[CHD][hapmap]
rs4508127	0.94[CHB][hapmap];0.81[ASN][1000 genomes]
rs4550151	0.94[CHB][hapmap];0.90[CHD][hapmap]
rs6537493	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs6537494	1.00[CHB][hapmap];0.90[CHD][hapmap];0.97[ASN][1000 genomes]
rs6537499	0.82[GIH][hapmap];0.80[TSI][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7073645	1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7074818	1.00[CHB][hapmap];0.90[CHD][hapmap];0.97[ASN][1000 genomes]
rs7084112	0.94[CHB][hapmap];0.87[CHD][hapmap]
rs7085823	0.94[CHB][hapmap];0.94[CHD][hapmap]
rs7093398	0.98[ASN][1000 genomes]
rs7094217	0.82[GIH][hapmap];0.80[TSI][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7097933	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[ASN][1000 genomes]
rs7098134	0.94[CHB][hapmap]
rs7897289	1.00[CHB][hapmap];0.97[ASN][1000 genomes]
rs7904272	0.93[CHB][hapmap]
rs7906722	1.00[CHB][hapmap];0.97[ASN][1000 genomes]
rs7916825	1.00[CHB][hapmap];0.96[ASN][1000 genomes]
rs9804403	0.94[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831866	chr10:50165180-50335276	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
2	esv2761593	chr10:50276812-50336129	Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50290800-50315400	Weak transcription	Fetal Intestine Small	intestine
2	chr10:50292200-50302600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr10:50292200-50311800	Weak transcription	Aorta	Aorta
4	chr10:50293400-50312400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:50294800-50302600	Weak transcription	Brain Angular Gyrus	brain
6	chr10:50295800-50311600	Weak transcription	K562	blood
7	chr10:50296400-50302200	Enhancers	Right Ventricle	heart
8	chr10:50296400-50304000	Genic enhancers	Fetal Muscle Leg	muscle
9	chr10:50297600-50302800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr10:50297600-50303800	Genic enhancers	Fetal Muscle Trunk	muscle
11	chr10:50298400-50302400	Weak transcription	Brain Cingulate Gyrus	brain
12	chr10:50298600-50302200	Weak transcription	Brain Substantia Nigra	brain
13	chr10:50298600-50302400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr10:50298600-50306000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr10:50298600-50306600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr10:50298600-50310400	Weak transcription	Fetal Intestine Large	intestine
17	chr10:50298600-50314400	Weak transcription	NHDF-Ad	bronchial
18	chr10:50298800-50302600	Weak transcription	Brain Hippocampus Middle	brain
19	chr10:50298800-50304200	Weak transcription	Fetal Heart	heart
20	chr10:50299000-50302200	Weak transcription	NHLF	lung
21	chr10:50299000-50312600	Weak transcription	Fetal Lung	lung
22	chr10:50299200-50301600	Weak transcription	Fetal Kidney	kidney
23	chr10:50299200-50303000	Weak transcription	Esophagus	oesophagus
24	chr10:50299200-50303200	Weak transcription	Psoas Muscle	Psoas
25	chr10:50299200-50307600	Weak transcription	Pancreas	Pancrea
26	chr10:50299400-50303600	Weak transcription	Lung	lung
27	chr10:50299600-50307400	Strong transcription	Fetal Stomach	stomach
28	chr10:50299600-50312200	Weak transcription	Colon Smooth Muscle	Colon
29	chr10:50299600-50314400	Weak transcription	HSMMtube	muscle
30	chr10:50300200-50302200	Weak transcription	Right Atrium	heart
31	chr10:50300200-50302400	Weak transcription	Adipose Nuclei	Adipose
32	chr10:50300800-50312400	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr10:50300800-50314600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr10:50301000-50301600	Strong transcription	Stomach Smooth Muscle	stomach
35	chr10:50301000-50302000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr10:50301000-50302200	Weak transcription	Left Ventricle	heart
37	chr10:50301000-50302400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr10:50301000-50302400	Weak transcription	Ovary	ovary

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