Variant report

Variant	rs6537493
Chromosome Location	chr10:50264047-50264048
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50242711..50245111-chr10:50261545..50265168,4	MCF-7	breast:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs12240534	0.92[CEU][hapmap]
rs12244666	0.84[CEU][hapmap];0.89[CHB][hapmap]
rs12244748	0.84[CEU][hapmap];0.89[CHB][hapmap]
rs12253426	0.84[CEU][hapmap];0.94[CHB][hapmap]
rs12255090	0.83[CEU][hapmap];0.88[CHB][hapmap]
rs12256777	0.84[CEU][hapmap];0.94[CHB][hapmap]
rs12257242	0.81[CEU][hapmap];0.89[CHB][hapmap]
rs12261297	0.81[CEU][hapmap];0.89[CHB][hapmap]
rs12269023	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12769361	0.81[CEU][hapmap];0.89[CHB][hapmap]
rs12774293	0.84[CEU][hapmap];0.89[CHB][hapmap]
rs12776460	0.94[CHB][hapmap]
rs17011757	0.94[CHB][hapmap]
rs17700872	0.81[CEU][hapmap];0.89[CHB][hapmap]
rs2137911	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs2137912	0.84[CEU][hapmap];0.94[CHB][hapmap];0.89[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs2137914	0.89[CHB][hapmap]
rs2246463	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2246673	0.84[CEU][hapmap];0.89[CHB][hapmap];0.88[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs2246937	0.89[CHB][hapmap]
rs2250146	0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs2250257	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2250349	0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2250602	0.85[ASN][1000 genomes]
rs2264846	0.84[CEU][hapmap];0.88[CHB][hapmap];0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2264847	0.84[CEU][hapmap];0.89[CHB][hapmap];0.88[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs2804934	0.87[CEU][hapmap]
rs2943253	0.83[CEU][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2943254	0.87[ASN][1000 genomes]
rs3924984	0.89[CHB][hapmap]
rs3924985	0.89[CHB][hapmap]
rs4128908	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4129035	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4240498	1.00[CHB][hapmap];0.87[JPT][hapmap];0.93[ASN][1000 genomes]
rs4317903	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4317904	0.87[JPT][hapmap];0.94[ASN][1000 genomes]
rs4400713	0.84[CEU][hapmap];0.88[CHB][hapmap]
rs4402204	0.84[CEU][hapmap];0.89[CHB][hapmap]
rs4403731	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4421674	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs4468264	0.89[CHB][hapmap]
rs4481947	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4497319	0.94[CHB][hapmap]
rs4508127	0.80[CEU][hapmap];0.89[CHB][hapmap]
rs4550151	0.94[CHB][hapmap]
rs4838447	0.82[CEU][hapmap]
rs6537494	1.00[CHB][hapmap];0.87[JPT][hapmap];0.93[ASN][1000 genomes]
rs7074818	1.00[CHB][hapmap];0.87[JPT][hapmap];0.93[ASN][1000 genomes]
rs7084112	0.94[CHB][hapmap]
rs7085823	0.84[CEU][hapmap];0.94[CHB][hapmap]
rs7093398	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7097933	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7098134	0.89[CHB][hapmap]
rs7897289	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7904272	0.88[CHB][hapmap]
rs7906722	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7916825	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9804403	0.87[CEU][hapmap];0.89[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831866	chr10:50165180-50335276	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50222800-50279000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr10:50232400-50279200	Weak transcription	Brain Hippocampus Middle	brain
3	chr10:50233000-50266000	Weak transcription	Colon Smooth Muscle	Colon
4	chr10:50243800-50278800	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr10:50245600-50264200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr10:50247000-50282600	Weak transcription	Brain Angular Gyrus	brain
7	chr10:50247800-50271600	Weak transcription	Fetal Intestine Small	intestine
8	chr10:50254400-50278800	Weak transcription	Rectal Smooth Muscle	rectum
9	chr10:50255800-50270200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr10:50257200-50266800	Weak transcription	Aorta	Aorta
11	chr10:50258200-50265800	Weak transcription	Fetal Kidney	kidney
12	chr10:50259200-50264400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr10:50260600-50267800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr10:50261200-50264800	Genic enhancers	Fetal Stomach	stomach
15	chr10:50261200-50265000	Enhancers	Right Atrium	heart
16	chr10:50261200-50267400	Enhancers	Right Ventricle	heart
17	chr10:50261200-50267600	Enhancers	Left Ventricle	heart
18	chr10:50261200-50267600	Enhancers	Ovary	ovary
19	chr10:50261400-50264200	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr10:50261800-50264600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr10:50261800-50264600	Weak transcription	Gastric	stomach
22	chr10:50262000-50267600	Genic enhancers	Fetal Muscle Leg	muscle
23	chr10:50262600-50266400	Weak transcription	HSMMtube	muscle
24	chr10:50262600-50267000	Weak transcription	Lung	lung
25	chr10:50262800-50267400	Enhancers	Adipose Nuclei	Adipose
26	chr10:50262800-50271600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr10:50263000-50264200	Strong transcription	Fetal Muscle Trunk	muscle
28	chr10:50263000-50264800	Enhancers	NHDF-Ad	bronchial
29	chr10:50263000-50267400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr10:50263200-50264400	Weak transcription	Spleen	Spleen
31	chr10:50263200-50264800	Genic enhancers	Stomach Smooth Muscle	stomach
32	chr10:50263400-50267600	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr10:50263400-50272200	Weak transcription	Fetal Brain Male	brain
34	chr10:50263600-50266800	Weak transcription	Psoas Muscle	Psoas
35	chr10:50263800-50264800	Enhancers	NHLF	lung
36	chr10:50263800-50265000	Enhancers	Esophagus	oesophagus
37	chr10:50263800-50265200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr10:50263800-50267000	Weak transcription	Fetal Lung	lung
39	chr10:50264000-50264200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr10:50264000-50264600	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr10:50264000-50264800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr10:50264000-50266600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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