Variant report

Variant	rs4508127
Chromosome Location	chr10:50294263-50294264
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50287416..50289075-chr10:50291865..50294530,2	MCF-7	breast:

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs12244666	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12244748	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12253426	0.95[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12255090	0.95[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12256777	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12257242	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12261297	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12269023	0.94[CHB][hapmap];0.81[ASN][1000 genomes]
rs12765281	0.95[CEU][hapmap];0.85[EUR][1000 genomes]
rs12769361	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12774293	0.96[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12776460	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17011744	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17011746	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17011757	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17700872	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17701186	0.85[EUR][1000 genomes]
rs17773851	0.95[CEU][hapmap];0.85[EUR][1000 genomes]
rs2003044	0.95[CEU][hapmap]
rs2137911	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2137912	0.95[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2137914	1.00[CHB][hapmap];0.83[JPT][hapmap];0.89[ASN][1000 genomes]
rs2246463	0.94[CHB][hapmap]
rs2246673	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2246937	1.00[CHB][hapmap];0.83[JPT][hapmap];0.89[ASN][1000 genomes]
rs2264846	0.95[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2264847	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2490838	0.82[EUR][1000 genomes]
rs2725179	0.95[CEU][hapmap];0.82[EUR][1000 genomes]
rs2725181	0.95[CEU][hapmap];0.81[EUR][1000 genomes]
rs2725184	0.83[EUR][1000 genomes]
rs2725185	0.83[EUR][1000 genomes]
rs2725190	0.82[EUR][1000 genomes]
rs2804937	0.95[CEU][hapmap];0.81[EUR][1000 genomes]
rs34062275	0.84[EUR][1000 genomes]
rs34110351	0.85[EUR][1000 genomes]
rs34289781	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34364659	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34467986	0.85[EUR][1000 genomes]
rs34574986	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34640094	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34878380	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35341824	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35462783	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35905744	0.87[EUR][1000 genomes]
rs35922675	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3924984	1.00[CHB][hapmap];0.83[JPT][hapmap];0.90[ASN][1000 genomes]
rs3924985	1.00[CHB][hapmap];0.83[JPT][hapmap];0.88[ASN][1000 genomes]
rs4073138	0.83[EUR][1000 genomes]
rs4073139	0.84[EUR][1000 genomes]
rs4128908	0.88[CHB][hapmap]
rs4129035	0.81[ASN][1000 genomes]
rs4240498	0.94[CHB][hapmap]
rs4317903	0.81[ASN][1000 genomes]
rs4317904	0.81[ASN][1000 genomes]
rs4364979	0.86[EUR][1000 genomes]
rs4400713	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4402204	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4403731	0.80[CEU][hapmap];0.89[CHB][hapmap];0.81[ASN][1000 genomes]
rs4421674	0.94[CHB][hapmap];0.81[ASN][1000 genomes]
rs4445564	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4468264	1.00[CHB][hapmap];0.92[JPT][hapmap];0.92[ASN][1000 genomes]
rs4481947	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4497319	1.00[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs4550151	1.00[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs4600129	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4644582	0.85[EUR][1000 genomes]
rs55947405	0.86[EUR][1000 genomes]
rs56291725	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58154726	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58893558	0.83[EUR][1000 genomes]
rs6537493	0.80[CEU][hapmap];0.89[CHB][hapmap]
rs6537494	0.94[CHB][hapmap]
rs67269950	0.85[EUR][1000 genomes]
rs68065270	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7070387	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7073208	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7074818	0.94[CHB][hapmap]
rs7081243	0.85[EUR][1000 genomes]
rs7084112	1.00[CHB][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs7085823	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7088718	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7097933	0.94[CHB][hapmap];0.81[ASN][1000 genomes]
rs7098134	1.00[CHB][hapmap];0.92[JPT][hapmap];0.93[ASN][1000 genomes]
rs7100655	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs72785015	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7896344	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7897289	0.89[CHB][hapmap]
rs7904272	1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs7906722	0.88[CHB][hapmap]
rs7907959	0.92[ASN][1000 genomes]
rs7916825	0.89[CHB][hapmap]
rs9804403	0.95[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831866	chr10:50165180-50335276	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
2	esv2761593	chr10:50276812-50336129	Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv522731	chr10:50293456-50294670	ZNF genes & repeats Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50283200-50298200	Weak transcription	Spleen	Spleen
2	chr10:50289200-50294400	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr10:50289600-50298800	Weak transcription	Fetal Thymus	thymus
4	chr10:50290200-50298200	Weak transcription	Colonic Mucosa	Colon
5	chr10:50290400-50295000	Weak transcription	K562	blood
6	chr10:50290800-50315400	Weak transcription	Fetal Intestine Small	intestine
7	chr10:50291200-50297200	Weak transcription	Lung	lung
8	chr10:50291800-50299600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:50292200-50294400	Weak transcription	Brain Angular Gyrus	brain
10	chr10:50292200-50294400	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr10:50292200-50296400	Weak transcription	Right Atrium	heart
12	chr10:50292200-50296600	Weak transcription	Stomach Smooth Muscle	stomach
13	chr10:50292200-50302600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr10:50292200-50311800	Weak transcription	Aorta	Aorta
15	chr10:50293000-50294400	Weak transcription	Fetal Lung	lung
16	chr10:50293200-50294400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr10:50293200-50296400	Weak transcription	Right Ventricle	heart
18	chr10:50293200-50297000	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr10:50293400-50294400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr10:50293400-50294400	Weak transcription	Fetal Intestine Large	intestine
21	chr10:50293400-50294400	Weak transcription	Fetal Muscle Trunk	muscle
22	chr10:50293400-50296600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr10:50293400-50296600	Weak transcription	Fetal Stomach	stomach
24	chr10:50293400-50296800	Weak transcription	Ovary	ovary
25	chr10:50293400-50312400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr10:50294000-50294400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr10:50294000-50294600	Strong transcription	Left Ventricle	heart
28	chr10:50294200-50294600	ZNF genes & repeats	HSMMtube	muscle
29	chr10:50294200-50294800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
30	chr10:50294200-50295600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr10:50294200-50295800	ZNF genes & repeats	Fetal Muscle Leg	muscle

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