Variant report

Variant	rs7074818
Chromosome Location	chr10:50298521-50298522
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50298074..50299624-chr10:50316267..50318551,2	K562	blood:
2	chr10:50288196..50290467-chr10:50297375..50300354,2	K562	blood:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs11100984	0.81[JPT][hapmap]
rs12244666	0.94[CHB][hapmap]
rs12244748	0.94[CHB][hapmap]
rs12245255	0.91[CEU][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12253426	0.94[CHB][hapmap]
rs12255090	0.94[CHB][hapmap]
rs12256777	0.94[CHB][hapmap];0.97[CHD][hapmap]
rs12257242	0.94[CHB][hapmap]
rs12261297	0.94[CHB][hapmap]
rs12269023	1.00[CHB][hapmap];0.94[CHD][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs12769361	0.94[CHB][hapmap]
rs12774293	0.94[CHB][hapmap]
rs12776460	0.94[CHB][hapmap];0.97[CHD][hapmap]
rs17011757	0.94[CHB][hapmap];0.94[CHD][hapmap]
rs17700872	0.94[CHB][hapmap]
rs2137912	0.94[CHB][hapmap];0.91[CHD][hapmap]
rs2137914	0.94[CHB][hapmap]
rs2246463	1.00[CHB][hapmap];0.94[CHD][hapmap];0.87[JPT][hapmap];0.92[ASN][1000 genomes]
rs2246673	0.94[CHB][hapmap]
rs2246937	0.94[CHB][hapmap]
rs2250146	0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs2250257	0.86[ASN][1000 genomes]
rs2250349	0.86[ASN][1000 genomes]
rs2264846	0.94[CHB][hapmap]
rs2264847	0.94[CHB][hapmap]
rs2943253	0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs2943254	0.86[ASN][1000 genomes]
rs34589684	0.83[EUR][1000 genomes]
rs3924984	0.94[CHB][hapmap]
rs3924985	0.94[CHB][hapmap]
rs4128908	1.00[CHB][hapmap];0.93[JPT][hapmap];0.95[ASN][1000 genomes]
rs4129035	0.97[ASN][1000 genomes]
rs4240498	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4317903	0.97[ASN][1000 genomes]
rs4317904	0.80[CHD][hapmap];0.87[JPT][hapmap];0.97[ASN][1000 genomes]
rs4400713	0.94[CHB][hapmap]
rs4402204	0.94[CHB][hapmap]
rs4403731	1.00[CHB][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs4421674	1.00[CHB][hapmap];0.90[CHD][hapmap];0.97[ASN][1000 genomes]
rs4421675	0.82[AMR][1000 genomes]
rs4468264	0.94[CHB][hapmap]
rs4497319	0.94[CHB][hapmap];1.00[CHD][hapmap]
rs4508127	0.94[CHB][hapmap]
rs4550151	0.94[CHB][hapmap];1.00[CHD][hapmap]
rs4558089	0.81[MEX][hapmap]
rs4617506	0.93[EUR][1000 genomes]
rs6537493	1.00[CHB][hapmap];0.87[JPT][hapmap];0.93[ASN][1000 genomes]
rs6537494	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7079570	0.81[MEX][hapmap]
rs7084112	0.94[CHB][hapmap];0.97[CHD][hapmap]
rs7085823	0.94[CHB][hapmap];0.97[CHD][hapmap]
rs7093398	0.96[ASN][1000 genomes]
rs7097933	1.00[CHB][hapmap];0.94[CHD][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs7098134	0.94[CHB][hapmap]
rs7897289	1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs7904272	0.93[CHB][hapmap]
rs7906722	1.00[CHB][hapmap];0.93[JPT][hapmap];0.95[ASN][1000 genomes]
rs7916825	1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs9804403	0.94[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831866	chr10:50165180-50335276	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
2	esv2761593	chr10:50276812-50336129	Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50289600-50298800	Weak transcription	Fetal Thymus	thymus
2	chr10:50290800-50315400	Weak transcription	Fetal Intestine Small	intestine
3	chr10:50291800-50299600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:50292200-50302600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr10:50292200-50311800	Weak transcription	Aorta	Aorta
6	chr10:50293400-50312400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr10:50294800-50302600	Weak transcription	Brain Angular Gyrus	brain
8	chr10:50295800-50298600	Weak transcription	NHLF	lung
9	chr10:50295800-50311600	Weak transcription	K562	blood
10	chr10:50296400-50300200	Enhancers	Right Atrium	heart
11	chr10:50296400-50302200	Enhancers	Right Ventricle	heart
12	chr10:50296400-50304000	Genic enhancers	Fetal Muscle Leg	muscle
13	chr10:50296600-50299000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr10:50296600-50299200	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr10:50296600-50299400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr10:50296600-50299400	Enhancers	Left Ventricle	heart
17	chr10:50296800-50301000	Enhancers	Ovary	ovary
18	chr10:50297000-50299000	Enhancers	Fetal Lung	lung
19	chr10:50297000-50300800	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr10:50297200-50298600	Enhancers	Brain Substantia Nigra	brain
21	chr10:50297200-50299000	Enhancers	Colon Smooth Muscle	Colon
22	chr10:50297200-50299400	Enhancers	Lung	lung
23	chr10:50297200-50299600	Genic enhancers	Fetal Stomach	stomach
24	chr10:50297400-50298600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr10:50297400-50299600	Enhancers	Adipose Nuclei	Adipose
26	chr10:50297600-50298800	Enhancers	Fetal Heart	heart
27	chr10:50297600-50299400	Enhancers	Placenta	Placenta
28	chr10:50297600-50302800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr10:50297600-50303800	Genic enhancers	Fetal Muscle Trunk	muscle
30	chr10:50297800-50298600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr10:50297800-50298800	Enhancers	HSMM	muscle
32	chr10:50297800-50299000	Enhancers	Duodenum Smooth Muscle	Duodenum
33	chr10:50298000-50298600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr10:50298000-50298800	Enhancers	Brain Hippocampus Middle	brain
35	chr10:50298000-50299200	Enhancers	Psoas Muscle	Psoas
36	chr10:50298000-50299400	Enhancers	Skeletal Muscle Male	skeletal muscle
37	chr10:50298200-50298600	Enhancers	HSMMtube	muscle
38	chr10:50298200-50298600	Enhancers	NHDF-Ad	bronchial
39	chr10:50298200-50298800	Flanking Active TSS	Stomach Smooth Muscle	stomach
40	chr10:50298200-50299200	Enhancers	Spleen	Spleen
41	chr10:50298200-50299400	Enhancers	Colonic Mucosa	Colon
42	chr10:50298400-50298600	Enhancers	Fetal Intestine Large	intestine
43	chr10:50298400-50299000	Weak transcription	Fetal Kidney	kidney
44	chr10:50298400-50299200	Enhancers	Esophagus	oesophagus
45	chr10:50298400-50299200	Enhancers	Pancreas	Pancrea
46	chr10:50298400-50302400	Weak transcription	Brain Cingulate Gyrus	brain

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