Variant report

Variant	rs4421675
Chromosome Location	chr10:50307476-50307477
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11100984	0.93[CEU][hapmap];0.93[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12245255	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12246766	0.97[ASN][1000 genomes]
rs12777282	0.89[CHB][hapmap]
rs13088	1.00[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs4240498	0.82[YRI][hapmap];0.82[AMR][1000 genomes]
rs4240499	0.88[ASN][1000 genomes]
rs4265516	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4298825	0.90[CHB][hapmap]
rs4488117	0.90[CHB][hapmap]
rs4509682	1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs4558089	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6537494	0.82[YRI][hapmap];0.82[AMR][1000 genomes]
rs6537497	0.86[JPT][hapmap]
rs7069758	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7074818	0.82[AMR][1000 genomes]
rs7079570	0.93[CEU][hapmap];0.91[CHB][hapmap];0.93[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831866	chr10:50165180-50335276	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
2	esv2761593	chr10:50276812-50336129	Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50290800-50315400	Weak transcription	Fetal Intestine Small	intestine
2	chr10:50292200-50311800	Weak transcription	Aorta	Aorta
3	chr10:50293400-50312400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:50295800-50311600	Weak transcription	K562	blood
5	chr10:50298600-50310400	Weak transcription	Fetal Intestine Large	intestine
6	chr10:50298600-50314400	Weak transcription	NHDF-Ad	bronchial
7	chr10:50299000-50312600	Weak transcription	Fetal Lung	lung
8	chr10:50299200-50307600	Weak transcription	Pancreas	Pancrea
9	chr10:50299600-50312200	Weak transcription	Colon Smooth Muscle	Colon
10	chr10:50299600-50314400	Weak transcription	HSMMtube	muscle
11	chr10:50300800-50312400	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr10:50300800-50314600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr10:50303200-50310600	Weak transcription	Brain Hippocampus Middle	brain
14	chr10:50303200-50314600	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr10:50303400-50313600	Weak transcription	Brain Substantia Nigra	brain
16	chr10:50303400-50314400	Weak transcription	Brain Anterior Caudate	brain
17	chr10:50303600-50314400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr10:50303600-50314400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr10:50303800-50314600	Weak transcription	Esophagus	oesophagus
20	chr10:50304000-50309600	Weak transcription	Adipose Nuclei	Adipose
21	chr10:50304000-50314400	Weak transcription	Brain Angular Gyrus	brain
22	chr10:50304600-50314400	Weak transcription	Liver	Liver
23	chr10:50304800-50317600	Weak transcription	Fetal Heart	heart
24	chr10:50305000-50307800	Genic enhancers	Fetal Muscle Leg	muscle
25	chr10:50305400-50314400	Weak transcription	NHLF	lung
26	chr10:50305800-50313600	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr10:50306400-50311600	Weak transcription	Right Atrium	heart
28	chr10:50306400-50314600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr10:50307000-50312000	Weak transcription	Left Ventricle	heart
30	chr10:50307000-50312400	Weak transcription	Right Ventricle	heart
31	chr10:50307200-50311800	Weak transcription	Fetal Muscle Trunk	muscle
32	chr10:50307400-50310200	Weak transcription	Fetal Stomach	stomach
33	chr10:50307400-50311600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr10:50307400-50311600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr10:50307400-50312400	Weak transcription	Ovary	ovary
36	chr10:50307400-50314200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr10:50307400-50314400	Weak transcription	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links