Variant report

Variant	rs6537497
Chromosome Location	chr10:50304998-50304999
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50304348..50306100-chr10:50311387..50313034,2	K562	blood:
2	chr10:50303445..50305723-chr10:50315132..50317304,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11100984	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs11100988	0.87[CEU][hapmap]
rs11100989	0.88[CEU][hapmap]
rs11100990	0.84[CEU][hapmap];0.89[TSI][hapmap]
rs12245255	0.82[CHD][hapmap];0.86[JPT][hapmap]
rs12255055	0.83[CEU][hapmap];0.84[MEX][hapmap];0.91[TSI][hapmap]
rs12269023	0.81[CEU][hapmap];0.82[JPT][hapmap];0.83[MEX][hapmap];0.86[TSI][hapmap]
rs13088	0.96[CEU][hapmap];0.98[GIH][hapmap];0.80[JPT][hapmap];0.92[MEX][hapmap];0.93[TSI][hapmap]
rs1986725	0.84[CEU][hapmap]
rs2246463	0.82[TSI][hapmap]
rs2804934	0.82[GIH][hapmap]
rs2804939	0.84[CEU][hapmap];0.89[GIH][hapmap];0.86[TSI][hapmap]
rs4073712	0.96[CEU][hapmap]
rs4128908	0.80[JPT][hapmap]
rs4265516	0.86[JPT][hapmap]
rs4317904	0.87[JPT][hapmap]
rs4344406	0.96[CEU][hapmap]
rs4350286	0.88[CEU][hapmap]
rs4403731	0.81[CEU][hapmap];0.82[JPT][hapmap]
rs4417190	0.88[CEU][hapmap]
rs4421675	0.86[JPT][hapmap]
rs4445564	0.86[CHD][hapmap]
rs4483510	0.83[CHB][hapmap]
rs4509682	0.96[CEU][hapmap];0.98[GIH][hapmap];0.93[JPT][hapmap];0.91[TSI][hapmap]
rs4558089	0.86[JPT][hapmap]
rs4558091	0.96[CEU][hapmap];0.96[GIH][hapmap];0.92[MEX][hapmap];0.93[TSI][hapmap]
rs4620641	0.88[CEU][hapmap];0.96[GIH][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap]
rs4838446	0.96[CEU][hapmap];0.96[GIH][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap]
rs4838447	0.87[CEU][hapmap]
rs7069758	0.85[JPT][hapmap]
rs7072243	0.96[CEU][hapmap];0.96[GIH][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap]
rs7097933	0.81[CEU][hapmap];0.82[JPT][hapmap];0.87[MEX][hapmap];0.85[TSI][hapmap]
rs7897289	0.82[JPT][hapmap]
rs7906722	0.81[JPT][hapmap]
rs7916825	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831866	chr10:50165180-50335276	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
2	esv2761593	chr10:50276812-50336129	Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6537497	MAPK8	cis	cerebellum	SCAN

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50290800-50315400	Weak transcription	Fetal Intestine Small	intestine
2	chr10:50292200-50311800	Weak transcription	Aorta	Aorta
3	chr10:50293400-50312400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:50295800-50311600	Weak transcription	K562	blood
5	chr10:50298600-50306000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr10:50298600-50306600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:50298600-50310400	Weak transcription	Fetal Intestine Large	intestine
8	chr10:50298600-50314400	Weak transcription	NHDF-Ad	bronchial
9	chr10:50299000-50312600	Weak transcription	Fetal Lung	lung
10	chr10:50299200-50307600	Weak transcription	Pancreas	Pancrea
11	chr10:50299600-50307400	Strong transcription	Fetal Stomach	stomach
12	chr10:50299600-50312200	Weak transcription	Colon Smooth Muscle	Colon
13	chr10:50299600-50314400	Weak transcription	HSMMtube	muscle
14	chr10:50300800-50312400	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr10:50300800-50314600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr10:50301600-50305400	Weak transcription	Stomach Smooth Muscle	stomach
17	chr10:50302400-50305200	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr10:50302400-50306000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr10:50303200-50310600	Weak transcription	Brain Hippocampus Middle	brain
20	chr10:50303200-50314600	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr10:50303400-50313600	Weak transcription	Brain Substantia Nigra	brain
22	chr10:50303400-50314400	Weak transcription	Brain Anterior Caudate	brain
23	chr10:50303600-50314400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr10:50303600-50314400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr10:50303800-50305000	Weak transcription	Fetal Muscle Trunk	muscle
26	chr10:50303800-50306200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr10:50303800-50306600	Enhancers	Ovary	ovary
28	chr10:50303800-50314600	Weak transcription	Esophagus	oesophagus
29	chr10:50304000-50305000	Weak transcription	Fetal Muscle Leg	muscle
30	chr10:50304000-50305000	Weak transcription	Left Ventricle	heart
31	chr10:50304000-50305000	Weak transcription	Right Atrium	heart
32	chr10:50304000-50305000	Weak transcription	Right Ventricle	heart
33	chr10:50304000-50305000	Weak transcription	NHLF	lung
34	chr10:50304000-50309600	Weak transcription	Adipose Nuclei	Adipose
35	chr10:50304000-50314400	Weak transcription	Brain Angular Gyrus	brain
36	chr10:50304600-50307000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr10:50304600-50314400	Weak transcription	Liver	Liver
38	chr10:50304800-50317600	Weak transcription	Fetal Heart	heart

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