Variant report

Variant	rs4350286
Chromosome Location	chr10:50327100-50327101
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr10:50326472-50327140	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:50321527..50324998-chr10:50325157..50328658,6	K562	blood:
2	chr10:50314500..50318570-chr10:50326499..50328270,3	K562	blood:
3	chr10:50322609..50324135-chr10:50326068..50328008,2	K562	blood:
4	chr10:50281055..50283973-chr10:50326395..50329291,2	K562	blood:

Variant related genes	Relation type
VSTM4	TF binding region
FAM170B-AS1	TF binding region
ENSG00000165633	Chromatin interaction

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs11100988	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11100989	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11100990	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12240534	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12246766	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12255055	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12267388	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12269023	0.84[CEU][hapmap]
rs12765281	0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12776553	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13088	0.92[CEU][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17701186	0.91[ASN][1000 genomes]
rs17773851	0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs17782733	0.94[CHB][hapmap];0.82[JPT][hapmap];0.95[ASN][1000 genomes]
rs1986725	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2003044	0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2490838	0.91[ASN][1000 genomes]
rs2725179	0.89[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2725181	0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2725184	0.90[ASN][1000 genomes]
rs2725185	0.91[ASN][1000 genomes]
rs2725190	0.91[ASN][1000 genomes]
rs2804930	1.00[JPT][hapmap]
rs2804931	0.89[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs2804932	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs2804934	0.84[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2804937	0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2804939	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2804940	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2804941	0.90[ASN][1000 genomes]
rs34056748	0.99[ASN][1000 genomes]
rs34062275	0.91[ASN][1000 genomes]
rs34110351	0.91[ASN][1000 genomes]
rs34436721	0.90[ASN][1000 genomes]
rs34467986	0.91[ASN][1000 genomes]
rs34589684	0.91[ASN][1000 genomes]
rs34786393	0.99[ASN][1000 genomes]
rs35007047	0.98[ASN][1000 genomes]
rs35285557	0.96[ASN][1000 genomes]
rs35666409	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs36015645	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4073138	0.90[ASN][1000 genomes]
rs4073139	0.90[ASN][1000 genomes]
rs4073711	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4073712	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs4240499	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4240500	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4344406	0.92[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4364979	0.96[ASN][1000 genomes]
rs4403731	0.81[CEU][hapmap]
rs4412679	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4417190	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[YRI][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4495812	0.91[ASN][1000 genomes]
rs4497320	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4509682	0.92[CEU][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4532948	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4558091	0.92[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4559606	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4620641	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4644582	0.96[ASN][1000 genomes]
rs4838365	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4838367	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4838446	0.92[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4838447	1.00[CEU][hapmap];0.88[CHB][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55947405	0.89[ASN][1000 genomes]
rs58893558	0.99[ASN][1000 genomes]
rs6537497	0.88[CEU][hapmap]
rs67269950	0.90[ASN][1000 genomes]
rs7072243	0.92[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7081243	0.91[ASN][1000 genomes]
rs7097933	0.84[CEU][hapmap]
rs7100655	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831866	chr10:50165180-50335276	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
2	esv2761593	chr10:50276812-50336129	Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	esv1824894	chr10:50309905-50340304	Genic enhancers Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
6	nsv550817	chr10:50319387-50328494	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	esv1818143	chr10:50323229-50332930	Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv982875	chr10:50324703-50328326	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50323800-50327800	Weak transcription	NH-A	brain
2	chr10:50324000-50327200	Enhancers	Fetal Thymus	thymus
3	chr10:50324000-50328200	Weak transcription	HSMMtube	muscle
4	chr10:50324000-50343600	Weak transcription	Right Atrium	heart
5	chr10:50324200-50328400	Weak transcription	Fetal Stomach	stomach
6	chr10:50324400-50327200	Enhancers	Fetal Muscle Leg	muscle
7	chr10:50324800-50328200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr10:50325000-50338600	Weak transcription	Fetal Muscle Trunk	muscle
9	chr10:50325000-50339400	Weak transcription	Ovary	ovary
10	chr10:50325400-50327200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr10:50325400-50328000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr10:50325800-50327800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr10:50326400-50327800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr10:50326600-50327200	Enhancers	Fetal Lung	lung
15	chr10:50326800-50328800	Weak transcription	Thymus	Thymus
16	chr10:50327000-50328000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr10:50327000-50328400	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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