Variant report

Variant	rs34786393
Chromosome Location	chr10:50329684-50329685
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10508910	0.87[AMR][1000 genomes]
rs11100988	0.81[ASN][1000 genomes]
rs11100989	0.97[ASN][1000 genomes]
rs11100990	0.97[ASN][1000 genomes]
rs12240534	0.94[ASN][1000 genomes]
rs12255055	0.94[ASN][1000 genomes]
rs12267388	0.97[ASN][1000 genomes]
rs12762834	0.85[AMR][1000 genomes]
rs12762859	0.85[AMR][1000 genomes]
rs12763447	0.85[AMR][1000 genomes]
rs12765281	0.92[ASN][1000 genomes]
rs12772732	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12774117	0.87[AMR][1000 genomes]
rs12776553	0.95[ASN][1000 genomes]
rs12777282	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17175928	0.85[AMR][1000 genomes]
rs17701186	0.92[ASN][1000 genomes]
rs17773851	0.91[ASN][1000 genomes]
rs17782595	0.85[AMR][1000 genomes]
rs17782649	0.87[AMR][1000 genomes]
rs17782673	0.80[AMR][1000 genomes]
rs17782691	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17782733	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1986725	0.90[ASN][1000 genomes]
rs2003044	0.82[ASN][1000 genomes]
rs2490838	0.91[ASN][1000 genomes]
rs2725179	0.86[ASN][1000 genomes]
rs2725181	0.86[ASN][1000 genomes]
rs2725184	0.91[ASN][1000 genomes]
rs2725185	0.91[ASN][1000 genomes]
rs2725190	0.91[ASN][1000 genomes]
rs2725194	0.84[EUR][1000 genomes]
rs2804931	0.81[ASN][1000 genomes]
rs2804932	0.87[EUR][1000 genomes]
rs2804934	0.83[ASN][1000 genomes]
rs2804937	0.91[ASN][1000 genomes]
rs2804939	0.90[ASN][1000 genomes]
rs2804940	0.90[ASN][1000 genomes]
rs2804941	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34056748	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34062275	0.92[ASN][1000 genomes]
rs34110351	0.92[ASN][1000 genomes]
rs34347666	0.85[AMR][1000 genomes]
rs34373855	0.87[AMR][1000 genomes]
rs34436721	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34467986	0.92[ASN][1000 genomes]
rs34589684	0.92[ASN][1000 genomes]
rs34712064	0.87[AMR][1000 genomes]
rs35007047	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35012082	0.80[AMR][1000 genomes]
rs35285557	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35311796	0.85[AMR][1000 genomes]
rs35496464	0.83[AMR][1000 genomes]
rs35586957	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35621290	0.85[AMR][1000 genomes]
rs35666409	0.95[ASN][1000 genomes]
rs4012666	0.85[AMR][1000 genomes]
rs4073138	0.91[ASN][1000 genomes]
rs4073139	0.91[ASN][1000 genomes]
rs4073711	0.93[ASN][1000 genomes]
rs4240500	0.83[ASN][1000 genomes]
rs4293050	0.85[AMR][1000 genomes]
rs4298825	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4310535	0.85[AMR][1000 genomes]
rs4342944	0.87[AMR][1000 genomes]
rs4350286	0.99[ASN][1000 genomes]
rs4364979	0.95[ASN][1000 genomes]
rs4412679	0.81[ASN][1000 genomes]
rs4417190	0.83[ASN][1000 genomes]
rs4483510	0.83[AMR][1000 genomes]
rs4488117	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4495812	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4497320	0.97[ASN][1000 genomes]
rs4532948	0.81[ASN][1000 genomes]
rs4620641	0.83[ASN][1000 genomes]
rs4644582	0.95[ASN][1000 genomes]
rs4838447	0.81[ASN][1000 genomes]
rs55947405	0.90[ASN][1000 genomes]
rs58893558	1.00[ASN][1000 genomes]
rs67269950	0.91[ASN][1000 genomes]
rs7081243	0.92[ASN][1000 genomes]
rs7100655	0.92[ASN][1000 genomes]
rs71500261	0.83[AMR][1000 genomes]
rs71500264	0.87[AMR][1000 genomes]
rs71500265	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831866	chr10:50165180-50335276	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
2	esv2761593	chr10:50276812-50336129	Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	esv1824894	chr10:50309905-50340304	Genic enhancers Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
6	esv1818143	chr10:50323229-50332930	Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50324000-50343600	Weak transcription	Right Atrium	heart
2	chr10:50325000-50338600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr10:50325000-50339400	Weak transcription	Ovary	ovary
4	chr10:50327600-50330200	Enhancers	Fetal Thymus	thymus
5	chr10:50329000-50329800	Weak transcription	Thymus	Thymus
6	chr10:50329000-50331800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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