Variant report

Variant	rs12762834
Chromosome Location	chr10:50296981-50296982
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10508910	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12762859	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12763447	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12770345	0.82[AMR][1000 genomes]
rs12772732	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12774117	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12776211	0.82[AMR][1000 genomes]
rs12777282	0.85[CEU][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17175928	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17782595	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.87[YRI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17782649	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17782673	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17782691	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17782733	0.85[CEU][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2137914	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2246937	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs2725194	0.82[YRI][hapmap]
rs2804932	0.88[YRI][hapmap]
rs34056748	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34347666	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34373855	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34436721	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34712064	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34786393	0.85[AMR][1000 genomes]
rs35007047	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35285557	0.85[AMR][1000 genomes]
rs35311796	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35496464	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35586957	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35621290	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3924984	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs3924985	0.87[CEU][hapmap];0.92[EUR][1000 genomes]
rs4012666	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4293050	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4298825	0.85[CEU][hapmap];0.88[JPT][hapmap];0.82[YRI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4310535	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4317904	0.86[CHB][hapmap]
rs4342944	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4445564	1.00[CHB][hapmap];0.89[JPT][hapmap];0.93[ASN][1000 genomes]
rs4468264	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs4483510	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4488117	0.85[CEU][hapmap];0.88[JPT][hapmap];0.87[YRI][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4497319	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs4550151	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs4617506	0.92[ASN][1000 genomes]
rs7084112	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs7098134	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs71500261	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs71500264	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71500265	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7904272	0.82[CEU][hapmap];0.94[EUR][1000 genomes]
rs7907959	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831866	chr10:50165180-50335276	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
2	esv2761593	chr10:50276812-50336129	Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50283200-50298200	Weak transcription	Spleen	Spleen
2	chr10:50289600-50298800	Weak transcription	Fetal Thymus	thymus
3	chr10:50290200-50298200	Weak transcription	Colonic Mucosa	Colon
4	chr10:50290800-50315400	Weak transcription	Fetal Intestine Small	intestine
5	chr10:50291200-50297200	Weak transcription	Lung	lung
6	chr10:50291800-50299600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:50292200-50302600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr10:50292200-50311800	Weak transcription	Aorta	Aorta
9	chr10:50293200-50297000	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr10:50293400-50312400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr10:50294800-50302600	Weak transcription	Brain Angular Gyrus	brain
12	chr10:50295200-50297200	Weak transcription	Fetal Brain Male	brain
13	chr10:50295200-50298000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr10:50295200-50298400	Weak transcription	Fetal Intestine Large	intestine
15	chr10:50295600-50297400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr10:50295800-50298600	Weak transcription	NHLF	lung
17	chr10:50295800-50311600	Weak transcription	K562	blood
18	chr10:50296400-50300200	Enhancers	Right Atrium	heart
19	chr10:50296400-50302200	Enhancers	Right Ventricle	heart
20	chr10:50296400-50304000	Genic enhancers	Fetal Muscle Leg	muscle
21	chr10:50296600-50297000	Genic enhancers	Fetal Lung	lung
22	chr10:50296600-50297000	Genic enhancers	Stomach Smooth Muscle	stomach
23	chr10:50296600-50297200	Strong transcription	Fetal Stomach	stomach
24	chr10:50296600-50297400	Genic enhancers	Fetal Muscle Trunk	muscle
25	chr10:50296600-50299000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr10:50296600-50299200	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr10:50296600-50299400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr10:50296600-50299400	Enhancers	Left Ventricle	heart
29	chr10:50296800-50297000	Transcr. at gene 5' and 3'	Colon Smooth Muscle	Colon
30	chr10:50296800-50297800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr10:50296800-50298000	Enhancers	HSMMtube	muscle
32	chr10:50296800-50301000	Enhancers	Ovary	ovary

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