Variant report

Variant	rs17782691
Chromosome Location	chr10:50303174-50303175
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10508910	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12762834	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12762859	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12763447	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12770345	0.80[AMR][1000 genomes]
rs12772732	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12774117	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12776211	0.80[AMR][1000 genomes]
rs12777282	0.85[CEU][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17175928	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17782595	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.87[YRI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17782649	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17782673	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17782733	0.85[CEU][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2137914	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2246937	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2725194	0.82[YRI][hapmap]
rs2804932	0.88[YRI][hapmap]
rs2804941	0.81[EUR][1000 genomes]
rs34056748	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34347666	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34373855	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34436721	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34712064	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34786393	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35007047	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35285557	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35311796	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35496464	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35586957	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35621290	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3924984	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs3924985	0.87[CEU][hapmap];0.91[EUR][1000 genomes]
rs4012666	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4293050	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4298825	0.85[CEU][hapmap];0.88[JPT][hapmap];0.82[YRI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4310535	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4317904	0.86[CHB][hapmap]
rs4342944	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4445564	1.00[CHB][hapmap];0.89[JPT][hapmap];0.92[ASN][1000 genomes]
rs4468264	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs4483510	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4488117	0.85[CEU][hapmap];0.88[JPT][hapmap];0.87[YRI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4495812	0.81[EUR][1000 genomes]
rs4497319	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs4550151	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs4617506	0.91[ASN][1000 genomes]
rs7084112	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs7098134	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs71500261	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs71500264	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs71500265	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7904272	0.82[CEU][hapmap];0.93[EUR][1000 genomes]
rs7907959	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831866	chr10:50165180-50335276	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
2	esv2761593	chr10:50276812-50336129	Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50290800-50315400	Weak transcription	Fetal Intestine Small	intestine
2	chr10:50292200-50311800	Weak transcription	Aorta	Aorta
3	chr10:50293400-50312400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:50295800-50311600	Weak transcription	K562	blood
5	chr10:50296400-50304000	Genic enhancers	Fetal Muscle Leg	muscle
6	chr10:50297600-50303800	Genic enhancers	Fetal Muscle Trunk	muscle
7	chr10:50298600-50306000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr10:50298600-50306600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr10:50298600-50310400	Weak transcription	Fetal Intestine Large	intestine
10	chr10:50298600-50314400	Weak transcription	NHDF-Ad	bronchial
11	chr10:50298800-50304200	Weak transcription	Fetal Heart	heart
12	chr10:50299000-50312600	Weak transcription	Fetal Lung	lung
13	chr10:50299200-50303200	Weak transcription	Psoas Muscle	Psoas
14	chr10:50299200-50307600	Weak transcription	Pancreas	Pancrea
15	chr10:50299400-50303600	Weak transcription	Lung	lung
16	chr10:50299600-50307400	Strong transcription	Fetal Stomach	stomach
17	chr10:50299600-50312200	Weak transcription	Colon Smooth Muscle	Colon
18	chr10:50299600-50314400	Weak transcription	HSMMtube	muscle
19	chr10:50300800-50312400	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr10:50300800-50314600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr10:50301600-50305400	Weak transcription	Stomach Smooth Muscle	stomach
22	chr10:50302200-50303400	Enhancers	Brain Substantia Nigra	brain
23	chr10:50302200-50303800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr10:50302200-50304000	Enhancers	Left Ventricle	heart
25	chr10:50302200-50304000	Enhancers	Right Atrium	heart
26	chr10:50302200-50304000	Enhancers	NHLF	lung
27	chr10:50302200-50304400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr10:50302200-50304600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr10:50302400-50303600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr10:50302400-50303600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr10:50302400-50305200	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr10:50302400-50306000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
33	chr10:50302600-50303200	Enhancers	Cortex derived primary cultured neurospheres	brain
34	chr10:50302600-50303200	Weak transcription	Brain Anterior Caudate	brain
35	chr10:50302600-50303200	Enhancers	Brain Germinal Matrix	brain
36	chr10:50302600-50303200	Enhancers	Brain Hippocampus Middle	brain
37	chr10:50302600-50303800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
38	chr10:50302600-50304000	Enhancers	Brain Angular Gyrus	brain
39	chr10:50302800-50303200	Flanking Active TSS	Adipose Nuclei	Adipose
40	chr10:50302800-50303200	Enhancers	Brain Inferior Temporal Lobe	brain
41	chr10:50302800-50303800	Genic enhancers	Ovary	ovary
42	chr10:50302800-50304000	Enhancers	Right Ventricle	heart
43	chr10:50303000-50303200	Enhancers	Esophagus	oesophagus

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