Variant report

Variant	rs34436721
Chromosome Location	chr10:50343424-50343425
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50322283..50325786-chr10:50341748..50344745,3	K562	blood:
2	chr10:50343053..50345152-chr10:50372726..50375346,2	K562	blood:

Variant related genes	Relation type
ENSG00000165633	Chromatin interaction
ENSG00000204161	Chromatin interaction

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10508910	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11100989	0.88[ASN][1000 genomes]
rs11100990	0.88[ASN][1000 genomes]
rs12240534	0.84[ASN][1000 genomes]
rs12255055	0.84[ASN][1000 genomes]
rs12267388	0.88[ASN][1000 genomes]
rs12762834	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12762859	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12763447	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12765281	0.98[ASN][1000 genomes]
rs12774117	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12776553	0.85[ASN][1000 genomes]
rs12777282	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17175928	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17701186	0.98[ASN][1000 genomes]
rs17773851	0.97[ASN][1000 genomes]
rs17782595	0.85[AMR][1000 genomes]
rs17782649	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17782673	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17782691	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17782733	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1986725	0.96[ASN][1000 genomes]
rs2003044	0.88[ASN][1000 genomes]
rs2490838	0.97[ASN][1000 genomes]
rs2725179	0.92[ASN][1000 genomes]
rs2725181	0.92[ASN][1000 genomes]
rs2725184	1.00[ASN][1000 genomes]
rs2725185	0.97[ASN][1000 genomes]
rs2725190	0.97[ASN][1000 genomes]
rs2725194	0.84[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs2804931	0.83[ASN][1000 genomes]
rs2804932	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2804934	0.89[ASN][1000 genomes]
rs2804937	0.96[ASN][1000 genomes]
rs2804939	0.96[ASN][1000 genomes]
rs2804940	0.96[ASN][1000 genomes]
rs2804941	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34056748	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34062275	0.98[ASN][1000 genomes]
rs34110351	0.98[ASN][1000 genomes]
rs34347666	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34373855	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34467986	0.98[ASN][1000 genomes]
rs34589684	0.98[ASN][1000 genomes]
rs34712064	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34786393	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35007047	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35012082	0.80[AMR][1000 genomes]
rs35285557	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35311796	0.85[AMR][1000 genomes]
rs35496464	0.87[AMR][1000 genomes]
rs35586957	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35621290	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35666409	0.85[ASN][1000 genomes]
rs4012666	0.81[AMR][1000 genomes]
rs4073138	1.00[ASN][1000 genomes]
rs4073139	1.00[ASN][1000 genomes]
rs4073711	0.84[ASN][1000 genomes]
rs4293050	0.81[AMR][1000 genomes]
rs4298825	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4310535	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4342944	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4350286	0.90[ASN][1000 genomes]
rs4364979	0.85[ASN][1000 genomes]
rs4483510	0.84[AMR][1000 genomes]
rs4488117	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4495812	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4497320	0.87[ASN][1000 genomes]
rs4644582	0.85[ASN][1000 genomes]
rs55947405	0.99[ASN][1000 genomes]
rs58893558	0.91[ASN][1000 genomes]
rs67269950	1.00[ASN][1000 genomes]
rs7081243	0.98[ASN][1000 genomes]
rs7100655	0.98[ASN][1000 genomes]
rs71500264	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50324000-50343600	Weak transcription	Right Atrium	heart
2	chr10:50336000-50344200	Enhancers	Fetal Muscle Leg	muscle
3	chr10:50340400-50343800	Weak transcription	K562	blood
4	chr10:50340400-50347600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr10:50341800-50344200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr10:50341800-50344200	Enhancers	Fetal Stomach	stomach
7	chr10:50341800-50344200	Enhancers	Fetal Thymus	thymus
8	chr10:50342000-50344000	Enhancers	Right Ventricle	heart
9	chr10:50342200-50343600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr10:50342200-50344600	Enhancers	Primary B cells from cord blood	blood
11	chr10:50342200-50346200	Weak transcription	Left Ventricle	heart
12	chr10:50342200-50347000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr10:50342200-50349800	Enhancers	Fetal Lung	lung
14	chr10:50342400-50344000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr10:50342400-50344400	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr10:50342400-50345400	Enhancers	Primary B cells from peripheral blood	blood
17	chr10:50342600-50344800	Enhancers	Adipose Nuclei	Adipose
18	chr10:50342800-50343600	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr10:50342800-50343800	Weak transcription	Dnd41	blood
20	chr10:50343000-50344000	Enhancers	Ovary	ovary
21	chr10:50343000-50357800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr10:50343200-50343800	Enhancers	Fetal Muscle Trunk	muscle
23	chr10:50343200-50344000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr10:50343200-50344000	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr10:50343200-50344200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
26	chr10:50343200-50344200	Enhancers	Lung	lung
27	chr10:50343400-50343800	Enhancers	Primary neutrophils fromperipheralblood	blood
28	chr10:50343400-50343800	Enhancers	Monocytes-CD14+_RO01746	blood
29	chr10:50343400-50344200	Enhancers	Sigmoid Colon	Sigmoid Colon

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