Variant report

Variant	rs2804931
Chromosome Location	chr10:50373521-50373522
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:50363165..50364785-chr10:50372172..50374062,3	K562	blood:
2	chr10:50372843..50375654-chr10:50384413..50387038,2	MCF-7	breast:
3	chr10:50372128..50374290-chr10:50587690..50589612,2	K562	blood:
4	chr10:50183053..50184790-chr10:50371419..50373904,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000204161	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs11100988	0.86[CHB][hapmap]
rs11100989	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs11100990	0.89[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap]
rs12240534	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs12245255	0.80[CEU][hapmap]
rs12255055	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs12765281	0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17701186	0.82[ASN][1000 genomes]
rs17773851	0.88[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs17782733	0.88[CHB][hapmap];0.91[JPT][hapmap]
rs1986725	0.89[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2002728	0.84[CHB][hapmap]
rs2003044	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2490838	0.86[ASN][1000 genomes]
rs2725179	0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2725181	0.94[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2725184	0.83[ASN][1000 genomes]
rs2725185	0.86[ASN][1000 genomes]
rs2725190	0.86[ASN][1000 genomes]
rs2725194	0.92[ASN][1000 genomes]
rs2725200	0.88[CHB][hapmap];0.89[CHD][hapmap];0.90[GIH][hapmap];0.94[MEX][hapmap];0.80[AMR][1000 genomes]
rs2804928	0.92[ASN][1000 genomes]
rs2804930	1.00[CEU][hapmap];0.88[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2804932	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.95[ASN][1000 genomes]
rs2804933	0.83[CHB][hapmap]
rs2804934	0.94[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2804937	0.88[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2804939	0.89[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2804940	0.86[ASN][1000 genomes]
rs2804941	0.87[ASN][1000 genomes]
rs34056748	0.81[ASN][1000 genomes]
rs34062275	0.82[ASN][1000 genomes]
rs34110351	0.82[ASN][1000 genomes]
rs34436721	0.83[ASN][1000 genomes]
rs34467986	0.82[ASN][1000 genomes]
rs34589684	0.82[ASN][1000 genomes]
rs34786393	0.81[ASN][1000 genomes]
rs4073138	0.83[ASN][1000 genomes]
rs4073139	0.83[ASN][1000 genomes]
rs4073712	0.86[CHB][hapmap]
rs4298825	0.83[MEX][hapmap]
rs4344406	0.88[CHB][hapmap]
rs4350286	0.89[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs4417190	0.88[CHB][hapmap]
rs4488117	0.83[MEX][hapmap]
rs4495812	0.86[ASN][1000 genomes]
rs4558091	0.89[CHB][hapmap]
rs4620641	0.89[CHB][hapmap]
rs4838446	0.89[CHB][hapmap]
rs55947405	0.83[ASN][1000 genomes]
rs58893558	0.81[ASN][1000 genomes]
rs67269950	0.83[ASN][1000 genomes]
rs7072243	0.89[CHB][hapmap]
rs7081243	0.82[ASN][1000 genomes]
rs7100655	0.89[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50359000-50382200	Weak transcription	Left Ventricle	heart
2	chr10:50359200-50375400	Weak transcription	Right Atrium	heart
3	chr10:50359400-50374000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr10:50362400-50380600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr10:50365400-50374800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr10:50365400-50374800	Weak transcription	Lung	lung
7	chr10:50366000-50373600	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr10:50366200-50378200	Weak transcription	Stomach Smooth Muscle	stomach
9	chr10:50366800-50375400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr10:50367600-50376200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
11	chr10:50367600-50384600	Weak transcription	Dnd41	blood
12	chr10:50368000-50375600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr10:50368200-50380800	Weak transcription	Esophagus	oesophagus
14	chr10:50369000-50377200	Weak transcription	Brain Angular Gyrus	brain
15	chr10:50369600-50380400	Weak transcription	Gastric	stomach
16	chr10:50369800-50373600	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr10:50370000-50375000	Weak transcription	Brain Substantia Nigra	brain
18	chr10:50370200-50373600	Genic enhancers	K562	blood
19	chr10:50371600-50377200	Weak transcription	Primary B cells from cord blood	blood
20	chr10:50372000-50384000	Weak transcription	Colonic Mucosa	Colon
21	chr10:50372400-50373600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr10:50372400-50373600	Enhancers	Fetal Muscle Trunk	muscle
23	chr10:50372400-50377000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr10:50372400-50377000	Weak transcription	NHDF-Ad	bronchial
25	chr10:50372800-50373800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr10:50372800-50374000	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr10:50372800-50374200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr10:50372800-50375600	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr10:50372800-50376800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr10:50372800-50377600	Weak transcription	Brain Hippocampus Middle	brain
31	chr10:50372800-50386200	Weak transcription	Pancreas	Pancrea
32	chr10:50373000-50375200	Weak transcription	Primary B cells from peripheral blood	blood
33	chr10:50373000-50376800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr10:50373200-50374000	Strong transcription	Fetal Muscle Leg	muscle
35	chr10:50373200-50375000	Strong transcription	Primary neutrophils fromperipheralblood	blood
36	chr10:50373200-50375600	Strong transcription	Adipose Nuclei	Adipose
37	chr10:50373200-50376400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr10:50373200-50376400	Strong transcription	Duodenum Mucosa	Duodenum
39	chr10:50373200-50385200	Weak transcription	Colon Smooth Muscle	Colon
40	chr10:50373400-50374000	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
41	chr10:50373400-50374800	Strong transcription	Right Ventricle	heart
42	chr10:50373400-50376000	Strong transcription	Spleen	Spleen

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links