Variant report

Variant	rs58893558
Chromosome Location	chr10:50335442-50335443
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50331517..50334584-chr10:50334823..50337870,3	K562	blood:

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs11100988	0.81[ASN][1000 genomes]
rs11100989	0.97[ASN][1000 genomes]
rs11100990	0.97[ASN][1000 genomes]
rs12240534	0.94[ASN][1000 genomes]
rs12244666	0.81[EUR][1000 genomes]
rs12244748	0.81[EUR][1000 genomes]
rs12253426	0.81[EUR][1000 genomes]
rs12255055	0.94[ASN][1000 genomes]
rs12255090	0.81[EUR][1000 genomes]
rs12256777	0.82[EUR][1000 genomes]
rs12257242	0.86[EUR][1000 genomes]
rs12261297	0.83[EUR][1000 genomes]
rs12267388	0.97[ASN][1000 genomes]
rs12765281	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12769361	0.86[EUR][1000 genomes]
rs12776460	0.86[EUR][1000 genomes]
rs12776553	0.95[ASN][1000 genomes]
rs17011744	0.82[EUR][1000 genomes]
rs17011746	0.82[EUR][1000 genomes]
rs17011757	0.83[EUR][1000 genomes]
rs17700872	0.86[EUR][1000 genomes]
rs17701186	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17773851	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17782733	0.94[ASN][1000 genomes]
rs1986725	0.90[ASN][1000 genomes]
rs2003044	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2490838	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2725179	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2725181	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2725184	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2725185	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2725190	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2804931	0.81[ASN][1000 genomes]
rs2804934	0.83[ASN][1000 genomes]
rs2804937	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2804939	0.90[ASN][1000 genomes]
rs2804940	0.90[ASN][1000 genomes]
rs2804941	0.91[ASN][1000 genomes]
rs34056748	1.00[ASN][1000 genomes]
rs34062275	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34110351	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34289781	0.85[EUR][1000 genomes]
rs34364659	0.86[EUR][1000 genomes]
rs34436721	0.91[ASN][1000 genomes]
rs34467986	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34574986	0.86[EUR][1000 genomes]
rs34589684	0.92[ASN][1000 genomes]
rs34640094	0.86[EUR][1000 genomes]
rs34786393	1.00[ASN][1000 genomes]
rs34878380	0.86[EUR][1000 genomes]
rs35007047	0.97[ASN][1000 genomes]
rs35285557	0.95[ASN][1000 genomes]
rs35341824	0.82[EUR][1000 genomes]
rs35462783	0.81[EUR][1000 genomes]
rs35666409	0.95[ASN][1000 genomes]
rs35922675	0.86[EUR][1000 genomes]
rs4073138	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4073139	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4073711	0.93[ASN][1000 genomes]
rs4240500	0.83[ASN][1000 genomes]
rs4350286	0.99[ASN][1000 genomes]
rs4364979	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4400713	0.82[EUR][1000 genomes]
rs4402204	0.81[EUR][1000 genomes]
rs4412679	0.81[ASN][1000 genomes]
rs4417190	0.83[ASN][1000 genomes]
rs4445564	0.84[EUR][1000 genomes]
rs4495812	0.91[ASN][1000 genomes]
rs4497320	0.97[ASN][1000 genomes]
rs4508127	0.83[EUR][1000 genomes]
rs4532948	0.81[ASN][1000 genomes]
rs4600129	0.83[EUR][1000 genomes]
rs4620641	0.83[ASN][1000 genomes]
rs4644582	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4838447	0.81[ASN][1000 genomes]
rs55947405	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56291725	0.86[EUR][1000 genomes]
rs58154726	0.85[EUR][1000 genomes]
rs67269950	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs68065270	0.85[EUR][1000 genomes]
rs7070387	0.80[EUR][1000 genomes]
rs7073208	0.81[EUR][1000 genomes]
rs7081243	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7085823	0.82[EUR][1000 genomes]
rs7088718	0.81[EUR][1000 genomes]
rs7100655	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72785015	0.86[EUR][1000 genomes]
rs7896344	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761593	chr10:50276812-50336129	Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	esv1824894	chr10:50309905-50340304	Genic enhancers Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50324000-50343600	Weak transcription	Right Atrium	heart
2	chr10:50325000-50338600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr10:50325000-50339400	Weak transcription	Ovary	ovary
4	chr10:50333000-50336000	Weak transcription	Fetal Muscle Leg	muscle
5	chr10:50333000-50336200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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