Variant report

Variant	rs11100988
Chromosome Location	chr10:50324685-50324686
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50322283..50325786-chr10:50341748..50344745,3	K562	blood:

Variant related genes	Relation type
ENSG00000172538	Chromatin interaction

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10218995	0.82[JPT][hapmap]
rs11100989	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11100990	0.95[CEU][hapmap];1.00[CHB][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12240534	0.87[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12246766	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12255055	0.81[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12267388	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12269023	0.86[CEU][hapmap]
rs12765281	0.93[CHB][hapmap]
rs12776553	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13088	0.91[CEU][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17773851	0.93[CHB][hapmap]
rs17782733	0.92[CHB][hapmap];0.81[ASN][1000 genomes]
rs1986725	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes]
rs2003044	0.86[CHB][hapmap]
rs2246463	0.82[CEU][hapmap]
rs2466756	0.82[JPT][hapmap]
rs2725179	0.85[CHB][hapmap]
rs2725180	0.82[JPT][hapmap]
rs2725181	0.93[CHB][hapmap]
rs2725192	0.82[JPT][hapmap]
rs2725200	1.00[JPT][hapmap]
rs2804931	0.86[CHB][hapmap]
rs2804932	0.86[CHB][hapmap]
rs2804933	0.82[JPT][hapmap]
rs2804934	0.86[CEU][hapmap];0.93[CHB][hapmap]
rs2804937	0.93[CHB][hapmap]
rs2804939	0.95[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes]
rs2804940	0.93[EUR][1000 genomes]
rs34056748	0.81[ASN][1000 genomes]
rs34786393	0.81[ASN][1000 genomes]
rs35007047	0.84[ASN][1000 genomes]
rs35285557	0.82[ASN][1000 genomes]
rs35666409	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs36015645	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4073711	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4073712	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4128908	0.82[CEU][hapmap]
rs4240499	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4240500	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4319434	0.82[JPT][hapmap]
rs4344406	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4350286	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4364979	0.82[ASN][1000 genomes]
rs4403731	0.83[CEU][hapmap]
rs4412679	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4417190	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4497320	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4509682	0.92[CEU][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4532948	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4558091	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4559606	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4620641	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4644582	0.82[ASN][1000 genomes]
rs4838365	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4838367	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4838446	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4838447	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58893558	0.81[ASN][1000 genomes]
rs6537497	0.87[CEU][hapmap]
rs6537499	0.82[JPT][hapmap]
rs7072243	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7094217	0.82[JPT][hapmap]
rs7097933	0.86[CEU][hapmap]
rs7100655	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831866	chr10:50165180-50335276	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
2	esv2761593	chr10:50276812-50336129	Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	esv1824894	chr10:50309905-50340304	Genic enhancers Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
6	nsv550817	chr10:50319387-50328494	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	esv1796109	chr10:50323229-50326725	Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
8	esv1802290	chr10:50323229-50326725	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
9	esv1818143	chr10:50323229-50332930	Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50323800-50326200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:50323800-50327800	Weak transcription	NH-A	brain
3	chr10:50324000-50324800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr10:50324000-50325000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr10:50324000-50325000	Enhancers	Ovary	ovary
6	chr10:50324000-50325200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr10:50324000-50325200	Weak transcription	Adipose Nuclei	Adipose
8	chr10:50324000-50325400	Enhancers	Liver	Liver
9	chr10:50324000-50325600	Weak transcription	Brain Angular Gyrus	brain
10	chr10:50324000-50325800	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr10:50324000-50327200	Enhancers	Fetal Thymus	thymus
12	chr10:50324000-50328200	Weak transcription	HSMMtube	muscle
13	chr10:50324000-50343600	Weak transcription	Right Atrium	heart
14	chr10:50324200-50325000	Enhancers	Fetal Muscle Trunk	muscle
15	chr10:50324200-50325400	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr10:50324200-50325400	Weak transcription	Stomach Smooth Muscle	stomach
17	chr10:50324200-50325600	Weak transcription	K562	blood
18	chr10:50324200-50326600	Weak transcription	Primary hematopoietic stem cells	blood
19	chr10:50324200-50328400	Weak transcription	Fetal Stomach	stomach
20	chr10:50324400-50327200	Enhancers	Fetal Muscle Leg	muscle
21	chr10:50324600-50324800	Enhancers	Spleen	Spleen

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