Variant report

Variant	rs4073712
Chromosome Location	chr10:50317649-50317650
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs11100988	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11100989	0.92[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11100990	0.87[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12240534	0.84[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12246766	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12255055	0.86[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12267388	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12269023	0.83[CEU][hapmap]
rs12765281	1.00[CHB][hapmap]
rs12776553	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13088	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17773851	1.00[CHB][hapmap]
rs17782733	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs1986725	0.88[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs2003044	0.86[CHB][hapmap]
rs2377983	0.87[YRI][hapmap]
rs2725179	0.93[CHB][hapmap]
rs2725181	0.92[CHB][hapmap]
rs2725200	1.00[JPT][hapmap]
rs2804931	0.86[CHB][hapmap]
rs2804932	0.86[CHB][hapmap]
rs2804934	0.83[CEU][hapmap];0.92[CHB][hapmap]
rs2804937	1.00[CHB][hapmap]
rs2804939	0.87[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs2804940	0.89[EUR][1000 genomes]
rs35285557	0.82[ASN][1000 genomes]
rs35666409	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs36015645	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4073711	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4240499	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4240500	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4344406	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4350286	0.92[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4364979	0.82[ASN][1000 genomes]
rs4403731	0.81[AMR][1000 genomes]
rs4412679	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4417190	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4497320	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4509682	1.00[CEU][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4532948	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4558091	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4559606	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4620641	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4644582	0.82[ASN][1000 genomes]
rs4838365	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4838367	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4838446	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4838447	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6537497	0.96[CEU][hapmap]
rs7072243	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7097933	0.83[CEU][hapmap];0.81[AMR][1000 genomes]
rs7100655	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831866	chr10:50165180-50335276	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
2	esv2761593	chr10:50276812-50336129	Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	esv1824894	chr10:50309905-50340304	Genic enhancers Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50311800-50317800	Weak transcription	Fetal Intestine Large	intestine
2	chr10:50312200-50320400	Enhancers	Colon Smooth Muscle	Colon
3	chr10:50312600-50322800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:50314400-50321400	Genic enhancers	Fetal Stomach	stomach
5	chr10:50314600-50318000	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr10:50314600-50318000	Genic enhancers	Fetal Muscle Trunk	muscle
7	chr10:50314600-50318000	Enhancers	Placenta	Placenta
8	chr10:50314600-50319800	Enhancers	Lung	lung
9	chr10:50314600-50320200	Enhancers	Right Atrium	heart
10	chr10:50314600-50321000	Genic enhancers	Fetal Muscle Leg	muscle
11	chr10:50315000-50317800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr10:50315000-50318800	Weak transcription	Psoas Muscle	Psoas
13	chr10:50315000-50322600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr10:50315200-50318000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr10:50315400-50317800	Weak transcription	Rectal Smooth Muscle	rectum
16	chr10:50315400-50319400	Weak transcription	Aorta	Aorta
17	chr10:50315400-50319600	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr10:50315400-50323000	Weak transcription	Pancreas	Pancrea
19	chr10:50315600-50317800	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr10:50315600-50323000	Weak transcription	Spleen	Spleen
21	chr10:50315800-50317800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr10:50315800-50317800	Weak transcription	Brain Cingulate Gyrus	brain
23	chr10:50315800-50318000	Weak transcription	Esophagus	oesophagus
24	chr10:50315800-50320600	Enhancers	Fetal Lung	lung
25	chr10:50315800-50322200	Enhancers	Left Ventricle	heart
26	chr10:50315800-50322600	Weak transcription	Liver	Liver
27	chr10:50316000-50318000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr10:50316000-50321200	Enhancers	Right Ventricle	heart
29	chr10:50316000-50321600	Enhancers	Ovary	ovary
30	chr10:50316600-50318200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr10:50316600-50320200	Weak transcription	Fetal Thymus	thymus
32	chr10:50316800-50317800	Enhancers	HSMM	muscle
33	chr10:50317000-50317800	Weak transcription	Fetal Intestine Small	intestine
34	chr10:50317000-50317800	Enhancers	Skeletal Muscle Male	skeletal muscle
35	chr10:50317000-50320400	Enhancers	NHDF-Ad	bronchial
36	chr10:50317200-50317800	Weak transcription	Duodenum Mucosa	Duodenum
37	chr10:50317200-50318800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
38	chr10:50317200-50319200	Enhancers	Brain Substantia Nigra	brain
39	chr10:50317200-50319400	Enhancers	Brain Angular Gyrus	brain
40	chr10:50317200-50320600	Enhancers	NHLF	lung
41	chr10:50317200-50321000	Enhancers	Adipose Nuclei	Adipose
42	chr10:50317200-50321600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr10:50317200-50321600	Enhancers	Skeletal Muscle Female	skeletal muscle
44	chr10:50317400-50318000	Enhancers	Fetal Kidney	kidney
45	chr10:50317400-50318200	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr10:50317400-50319000	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr10:50317400-50322000	Weak transcription	K562	blood
48	chr10:50317600-50317800	Enhancers	Brain Hippocampus Middle	brain
49	chr10:50317600-50318000	Enhancers	Brain Anterior Caudate	brain
50	chr10:50317600-50318000	Flanking Active TSS	HSMMtube	muscle

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