Variant report

Variant	rs17773851
Chromosome Location	chr10:50340304-50340305
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:50338793..50341624-chr10:50344391..50347108,2	K562	blood:
2	chr10:50338354..50340980-chr10:50380795..50383711,2	K562	blood:
3	chr10:50338839..50340427-chr10:50376462..50378560,2	K562	blood:
4	chr10:50327680..50329332-chr10:50338988..50341061,2	K562	blood:
5	chr10:50339347..50342012-chr10:50362966..50365728,2	K562	blood:

Variant related genes	Relation type
ENSG00000234736	Chromatin interaction

Extended variants
information (count: 103 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:100)

rs_ID	r²[population]
rs11100988	0.93[CHB][hapmap]
rs11100989	0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11100990	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12240534	0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12244666	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs12244748	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs12253426	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs12255055	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12255090	0.95[CEU][hapmap];0.82[EUR][1000 genomes]
rs12256777	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs12257242	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs12261297	0.95[CEU][hapmap];0.85[EUR][1000 genomes]
rs12267388	0.89[ASN][1000 genomes]
rs12765281	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12769361	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs12774293	0.91[CEU][hapmap];0.80[EUR][1000 genomes]
rs12776460	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs12776553	0.86[ASN][1000 genomes]
rs17011744	0.83[EUR][1000 genomes]
rs17011746	0.83[EUR][1000 genomes]
rs17011757	0.95[CEU][hapmap];0.85[EUR][1000 genomes]
rs17700872	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs17701186	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17782733	1.00[CHB][hapmap];0.82[JPT][hapmap];0.85[YRI][hapmap];0.85[ASN][1000 genomes]
rs1986725	0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2003044	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2137912	0.91[CEU][hapmap]
rs2246673	0.91[CEU][hapmap]
rs2264846	0.91[CEU][hapmap]
rs2264847	0.91[CEU][hapmap]
rs2490838	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2725179	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2725181	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2725184	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2725185	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2725190	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2725194	1.00[YRI][hapmap]
rs2804930	1.00[JPT][hapmap]
rs2804931	0.88[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2804932	0.88[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs2804934	0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2804937	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2804939	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2804940	0.93[ASN][1000 genomes]
rs2804941	0.94[ASN][1000 genomes]
rs34056748	0.91[ASN][1000 genomes]
rs34062275	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34110351	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34289781	0.86[EUR][1000 genomes]
rs34364659	0.88[EUR][1000 genomes]
rs34436721	0.97[ASN][1000 genomes]
rs34467986	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34574986	0.88[EUR][1000 genomes]
rs34589684	0.99[ASN][1000 genomes]
rs34640094	0.88[EUR][1000 genomes]
rs34786393	0.91[ASN][1000 genomes]
rs34878380	0.88[EUR][1000 genomes]
rs35007047	0.89[ASN][1000 genomes]
rs35285557	0.86[ASN][1000 genomes]
rs35341824	0.83[EUR][1000 genomes]
rs35462783	0.82[EUR][1000 genomes]
rs35666409	0.86[ASN][1000 genomes]
rs35922675	0.88[EUR][1000 genomes]
rs4073138	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4073139	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4073711	0.84[ASN][1000 genomes]
rs4073712	1.00[CHB][hapmap]
rs4344406	0.94[CHB][hapmap]
rs4350286	0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4364979	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4400713	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs4402204	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs4417190	0.94[CHB][hapmap]
rs4445564	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs4481947	0.80[EUR][1000 genomes]
rs4495812	0.95[ASN][1000 genomes]
rs4497320	0.88[ASN][1000 genomes]
rs4508127	0.95[CEU][hapmap];0.85[EUR][1000 genomes]
rs4558091	1.00[CHB][hapmap]
rs4600129	0.83[EUR][1000 genomes]
rs4620641	1.00[CHB][hapmap]
rs4644582	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4838446	1.00[CHB][hapmap]
rs4838447	0.88[CHB][hapmap]
rs55947405	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56291725	0.88[EUR][1000 genomes]
rs58154726	0.86[EUR][1000 genomes]
rs58893558	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67269950	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs68065270	0.86[EUR][1000 genomes]
rs7070387	0.82[EUR][1000 genomes]
rs7072243	1.00[CHB][hapmap]
rs7073208	0.82[EUR][1000 genomes]
rs7081243	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7085823	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs7088718	0.82[EUR][1000 genomes]
rs7100655	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72785015	0.88[EUR][1000 genomes]
rs7896344	0.82[EUR][1000 genomes]
rs9804403	0.91[CEU][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	esv1824894	chr10:50309905-50340304	Genic enhancers Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50324000-50343600	Weak transcription	Right Atrium	heart
2	chr10:50336000-50344200	Enhancers	Fetal Muscle Leg	muscle
3	chr10:50336600-50341800	Weak transcription	Fetal Thymus	thymus
4	chr10:50338600-50340400	Enhancers	Fetal Muscle Trunk	muscle
5	chr10:50339800-50342200	Weak transcription	Fetal Lung	lung
6	chr10:50340000-50340400	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr10:50340000-50340400	Enhancers	Colonic Mucosa	Colon
8	chr10:50340000-50340600	Enhancers	HSMMtube	muscle
9	chr10:50340000-50341800	Weak transcription	Left Ventricle	heart
10	chr10:50340200-50340400	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr10:50340200-50340400	Enhancers	K562	blood

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