Variant report

Variant	rs9804403
Chromosome Location	chr10:50262144-50262145
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:50242711..50245111-chr10:50261545..50265168,4	MCF-7	breast:
2	chr10:50262030..50262749-chr12:54228756..54229329,2	MCF-7	breast:
3	chr10:50261106..50262953-chr10:50265255..50267804,2	MCF-7	breast:
4	chr10:50255638..50257367-chr10:50260546..50263382,2	K562	blood:

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs12244666	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12244748	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12253426	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12255090	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12256777	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12257242	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12261297	0.95[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12269023	0.94[CHB][hapmap]
rs12765281	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs12769361	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12774293	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12776460	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17011744	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17011746	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17011757	0.95[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17700872	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17701186	0.81[EUR][1000 genomes]
rs17773851	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs2003044	0.91[CEU][hapmap]
rs2137911	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2137912	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.87[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2137914	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2246463	0.83[CEU][hapmap];0.94[CHB][hapmap]
rs2246673	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2246937	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2264846	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2264847	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2725179	0.91[CEU][hapmap]
rs2725181	0.91[CEU][hapmap]
rs2804937	0.91[CEU][hapmap]
rs34062275	0.80[EUR][1000 genomes]
rs34110351	0.81[EUR][1000 genomes]
rs34289781	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34364659	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34467986	0.81[EUR][1000 genomes]
rs34574986	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34640094	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34878380	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35341824	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35462783	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35905744	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs35922675	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3924984	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3924985	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4073139	0.80[EUR][1000 genomes]
rs4128908	0.87[CEU][hapmap];0.88[CHB][hapmap]
rs4240498	0.94[CHB][hapmap]
rs4364979	0.82[EUR][1000 genomes]
rs4400713	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4402204	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4403731	0.89[CHB][hapmap]
rs4421674	0.94[CHB][hapmap]
rs4445564	0.95[CEU][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4468264	1.00[CHB][hapmap];0.91[JPT][hapmap];0.98[ASN][1000 genomes]
rs4481947	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4497319	1.00[CHB][hapmap];0.90[JPT][hapmap];0.98[ASN][1000 genomes]
rs4508127	0.95[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4550151	1.00[CHB][hapmap];0.90[JPT][hapmap];0.98[ASN][1000 genomes]
rs4600129	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4644582	0.82[EUR][1000 genomes]
rs56291725	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58154726	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6537493	0.87[CEU][hapmap];0.89[CHB][hapmap]
rs6537494	0.94[CHB][hapmap]
rs67269950	0.81[EUR][1000 genomes]
rs68065270	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7070387	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7073208	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7074818	0.94[CHB][hapmap]
rs7081243	0.81[EUR][1000 genomes]
rs7084112	1.00[CHB][hapmap];0.90[JPT][hapmap];0.96[ASN][1000 genomes]
rs7085823	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7088718	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7097933	0.94[CHB][hapmap]
rs7098134	1.00[CHB][hapmap];0.91[JPT][hapmap];0.96[ASN][1000 genomes]
rs7100655	0.91[CEU][hapmap];0.80[EUR][1000 genomes]
rs72785015	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7896344	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7897289	0.84[CEU][hapmap];0.89[CHB][hapmap]
rs7904272	1.00[CHB][hapmap];0.90[JPT][hapmap];0.96[ASN][1000 genomes]
rs7906722	0.84[CEU][hapmap];0.88[CHB][hapmap]
rs7907959	0.98[ASN][1000 genomes]
rs7916825	0.84[CEU][hapmap];0.89[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831866	chr10:50165180-50335276	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50222800-50279000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr10:50232400-50279200	Weak transcription	Brain Hippocampus Middle	brain
3	chr10:50233000-50266000	Weak transcription	Colon Smooth Muscle	Colon
4	chr10:50241600-50263200	Weak transcription	NHLF	lung
5	chr10:50243800-50278800	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr10:50245600-50264200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr10:50247000-50282600	Weak transcription	Brain Angular Gyrus	brain
8	chr10:50247800-50271600	Weak transcription	Fetal Intestine Small	intestine
9	chr10:50254400-50278800	Weak transcription	Rectal Smooth Muscle	rectum
10	chr10:50255800-50270200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr10:50257200-50266800	Weak transcription	Aorta	Aorta
12	chr10:50258200-50265800	Weak transcription	Fetal Kidney	kidney
13	chr10:50259000-50262200	Weak transcription	Adipose Nuclei	Adipose
14	chr10:50259200-50264400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr10:50259400-50263000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr10:50259400-50263000	Weak transcription	NHDF-Ad	bronchial
17	chr10:50259800-50264000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr10:50260600-50262400	Enhancers	GM12878-XiMat	blood
19	chr10:50260600-50267800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr10:50260800-50263200	Enhancers	Stomach Smooth Muscle	stomach
21	chr10:50261200-50262600	Enhancers	Esophagus	oesophagus
22	chr10:50261200-50262600	Enhancers	Lung	lung
23	chr10:50261200-50263000	Genic enhancers	Fetal Muscle Trunk	muscle
24	chr10:50261200-50263600	Enhancers	Psoas Muscle	Psoas
25	chr10:50261200-50264800	Genic enhancers	Fetal Stomach	stomach
26	chr10:50261200-50265000	Enhancers	Right Atrium	heart
27	chr10:50261200-50267400	Enhancers	Right Ventricle	heart
28	chr10:50261200-50267600	Enhancers	Left Ventricle	heart
29	chr10:50261200-50267600	Enhancers	Ovary	ovary
30	chr10:50261400-50263200	Enhancers	Spleen	Spleen
31	chr10:50261400-50264200	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr10:50261600-50262600	Enhancers	HSMMtube	muscle
33	chr10:50261600-50263800	Enhancers	Fetal Lung	lung
34	chr10:50261800-50264600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr10:50261800-50264600	Weak transcription	Gastric	stomach
36	chr10:50262000-50262200	Enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr10:50262000-50262200	Enhancers	Skeletal Muscle Male	skeletal muscle
38	chr10:50262000-50262600	Enhancers	Pancreas	Pancrea
39	chr10:50262000-50263800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr10:50262000-50267600	Genic enhancers	Fetal Muscle Leg	muscle

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