Variant report

Variant	rs2137911
Chromosome Location	chr10:50257730-50257731
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs12244666	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12244748	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12253426	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12255090	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12256777	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12257242	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12261297	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12769361	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12774293	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12776460	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17011744	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17011746	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17011757	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17700872	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2137912	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2137914	0.94[ASN][1000 genomes]
rs2246463	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs2246673	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2246937	0.94[ASN][1000 genomes]
rs2264846	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2264847	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34289781	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34364659	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34574986	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34640094	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34878380	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35341824	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35462783	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35905744	0.86[EUR][1000 genomes]
rs35922675	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3924984	0.93[ASN][1000 genomes]
rs3924985	0.92[ASN][1000 genomes]
rs4364979	0.80[EUR][1000 genomes]
rs4400713	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4402204	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4445564	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4468264	0.92[ASN][1000 genomes]
rs4481947	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4497319	0.92[ASN][1000 genomes]
rs4508127	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4550151	0.92[ASN][1000 genomes]
rs4600129	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55947405	0.81[EUR][1000 genomes]
rs56291725	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58154726	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6537493	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs68065270	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7070387	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7073208	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7084112	0.90[ASN][1000 genomes]
rs7085823	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7088718	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7098134	0.90[ASN][1000 genomes]
rs72785015	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7896344	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7897289	0.87[AFR][1000 genomes]
rs7904272	0.90[ASN][1000 genomes]
rs7906722	0.82[AFR][1000 genomes]
rs7907959	0.92[ASN][1000 genomes]
rs7916825	0.83[AFR][1000 genomes]
rs9804403	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831866	chr10:50165180-50335276	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50222800-50279000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr10:50224400-50258200	Weak transcription	Brain Anterior Caudate	brain
3	chr10:50232400-50279200	Weak transcription	Brain Hippocampus Middle	brain
4	chr10:50233000-50266000	Weak transcription	Colon Smooth Muscle	Colon
5	chr10:50233800-50261400	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr10:50233800-50261400	Weak transcription	Spleen	Spleen
7	chr10:50241600-50263200	Weak transcription	NHLF	lung
8	chr10:50242400-50258000	Weak transcription	Fetal Kidney	kidney
9	chr10:50242400-50259200	Weak transcription	Brain Substantia Nigra	brain
10	chr10:50243400-50261200	Weak transcription	Lung	lung
11	chr10:50243800-50278800	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr10:50245400-50258200	Weak transcription	Osteobl	bone
13	chr10:50245600-50264200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr10:50245800-50257800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr10:50247000-50259000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr10:50247000-50282600	Weak transcription	Brain Angular Gyrus	brain
17	chr10:50247800-50271600	Weak transcription	Fetal Intestine Small	intestine
18	chr10:50249200-50258000	Weak transcription	Liver	Liver
19	chr10:50251200-50257800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr10:50252200-50261200	Weak transcription	Psoas Muscle	Psoas
21	chr10:50254400-50278800	Weak transcription	Rectal Smooth Muscle	rectum
22	chr10:50255400-50261200	Weak transcription	Left Ventricle	heart
23	chr10:50255600-50259000	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr10:50255800-50258000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr10:50255800-50258800	Weak transcription	NHDF-Ad	bronchial
26	chr10:50255800-50261200	Weak transcription	Right Ventricle	heart
27	chr10:50255800-50270200	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr10:50256800-50258200	Enhancers	H9 Cell Line	embryonic stem cell
29	chr10:50257000-50260600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr10:50257200-50258000	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr10:50257200-50258200	Enhancers	HUES48 Cell Line	embryonic stem cell
32	chr10:50257200-50258200	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr10:50257200-50258800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr10:50257200-50259000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr10:50257200-50259000	Weak transcription	Ovary	ovary
36	chr10:50257200-50260800	Weak transcription	Stomach Smooth Muscle	stomach
37	chr10:50257200-50261600	Weak transcription	HSMMtube	muscle
38	chr10:50257200-50266800	Weak transcription	Aorta	Aorta
39	chr10:50257400-50257800	Enhancers	ES-I3 Cell Line	embryonic stem cell
40	chr10:50257400-50257800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
41	chr10:50257400-50258200	Enhancers	HUES6 Cell Line	embryonic stem cell
42	chr10:50257400-50258400	Enhancers	iPS-15b Cell Line	embryonic stem cell
43	chr10:50257400-50259000	Enhancers	Adipose Nuclei	Adipose
44	chr10:50257400-50259800	Enhancers	Fetal Lung	lung
45	chr10:50257400-50261200	Enhancers	Fetal Stomach	stomach
46	chr10:50257600-50258800	Enhancers	iPS-20b Cell Line	embryonic stem cell
47	chr10:50257600-50259000	Weak transcription	Fetal Muscle Leg	muscle
48	chr10:50257600-50259400	Weak transcription	Fetal Muscle Trunk	muscle

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