Variant report

Variant	rs55947405
Chromosome Location	chr10:50342629-50342630
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CHD2	chr10:50342552-50342669	GM12878	blood:	n/a	n/a
2	SPI1	chr10:50342273-50342781	HL-60	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50322283..50325786-chr10:50341748..50344745,3	K562	blood:

Variant related genes	Relation type
FAM170B-AS1	TF binding region
FAM170B	TF binding region
ENSG00000165633	Chromatin interaction

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs11100989	0.87[ASN][1000 genomes]
rs11100990	0.87[ASN][1000 genomes]
rs12240534	0.84[ASN][1000 genomes]
rs12244666	0.80[EUR][1000 genomes]
rs12244748	0.80[EUR][1000 genomes]
rs12253426	0.80[EUR][1000 genomes]
rs12255055	0.84[ASN][1000 genomes]
rs12255090	0.80[EUR][1000 genomes]
rs12256777	0.82[EUR][1000 genomes]
rs12257242	0.86[EUR][1000 genomes]
rs12261297	0.86[EUR][1000 genomes]
rs12267388	0.87[ASN][1000 genomes]
rs12765281	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12769361	0.86[EUR][1000 genomes]
rs12776460	0.86[EUR][1000 genomes]
rs12776553	0.85[ASN][1000 genomes]
rs17011744	0.82[EUR][1000 genomes]
rs17011746	0.82[EUR][1000 genomes]
rs17011757	0.86[EUR][1000 genomes]
rs17700872	0.86[EUR][1000 genomes]
rs17701186	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17773851	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17782733	0.84[ASN][1000 genomes]
rs1986725	0.96[ASN][1000 genomes]
rs2003044	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2137911	0.81[EUR][1000 genomes]
rs2490838	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2725179	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2725181	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2725184	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2725185	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2725190	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2804931	0.83[ASN][1000 genomes]
rs2804934	0.90[ASN][1000 genomes]
rs2804937	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2804939	0.96[ASN][1000 genomes]
rs2804940	0.96[ASN][1000 genomes]
rs2804941	0.96[ASN][1000 genomes]
rs34056748	0.90[ASN][1000 genomes]
rs34062275	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34110351	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34289781	0.84[EUR][1000 genomes]
rs34364659	0.86[EUR][1000 genomes]
rs34436721	0.99[ASN][1000 genomes]
rs34467986	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34574986	0.86[EUR][1000 genomes]
rs34589684	0.97[ASN][1000 genomes]
rs34640094	0.86[EUR][1000 genomes]
rs34786393	0.90[ASN][1000 genomes]
rs34878380	0.86[EUR][1000 genomes]
rs35007047	0.87[ASN][1000 genomes]
rs35285557	0.85[ASN][1000 genomes]
rs35341824	0.82[EUR][1000 genomes]
rs35462783	0.80[EUR][1000 genomes]
rs35666409	0.85[ASN][1000 genomes]
rs35922675	0.86[EUR][1000 genomes]
rs4073138	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4073139	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4073711	0.83[ASN][1000 genomes]
rs4350286	0.89[ASN][1000 genomes]
rs4364979	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4400713	0.82[EUR][1000 genomes]
rs4402204	0.80[EUR][1000 genomes]
rs4445564	0.86[EUR][1000 genomes]
rs4481947	0.82[EUR][1000 genomes]
rs4495812	0.96[ASN][1000 genomes]
rs4497320	0.86[ASN][1000 genomes]
rs4508127	0.86[EUR][1000 genomes]
rs4600129	0.84[EUR][1000 genomes]
rs4644582	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56291725	0.86[EUR][1000 genomes]
rs58154726	0.84[EUR][1000 genomes]
rs58893558	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67269950	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs68065270	0.84[EUR][1000 genomes]
rs7073208	0.80[EUR][1000 genomes]
rs7081243	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7085823	0.82[EUR][1000 genomes]
rs7088718	0.80[EUR][1000 genomes]
rs7100655	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72785015	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50324000-50343600	Weak transcription	Right Atrium	heart
2	chr10:50336000-50344200	Enhancers	Fetal Muscle Leg	muscle
3	chr10:50340400-50343800	Weak transcription	K562	blood
4	chr10:50340400-50347600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr10:50341600-50342800	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr10:50341800-50344200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr10:50341800-50344200	Enhancers	Fetal Stomach	stomach
8	chr10:50341800-50344200	Enhancers	Fetal Thymus	thymus
9	chr10:50342000-50342800	Enhancers	Dnd41	blood
10	chr10:50342000-50344000	Enhancers	Right Ventricle	heart
11	chr10:50342200-50343200	Weak transcription	Fetal Muscle Trunk	muscle
12	chr10:50342200-50343400	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr10:50342200-50343600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr10:50342200-50344600	Enhancers	Primary B cells from cord blood	blood
15	chr10:50342200-50346200	Weak transcription	Left Ventricle	heart
16	chr10:50342200-50347000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr10:50342200-50349800	Enhancers	Fetal Lung	lung
18	chr10:50342400-50342800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr10:50342400-50343000	Enhancers	Primary neutrophils fromperipheralblood	blood
20	chr10:50342400-50344000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr10:50342400-50344400	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr10:50342400-50345400	Enhancers	Primary B cells from peripheral blood	blood
23	chr10:50342600-50342800	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr10:50342600-50342800	Enhancers	Psoas Muscle	Psoas
25	chr10:50342600-50343000	Bivalent/Poised TSS	Fetal Brain Male	brain
26	chr10:50342600-50344800	Enhancers	Adipose Nuclei	Adipose

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