Variant report

Variant	rs2804941
Chromosome Location	chr10:50360520-50360521
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:50355645..50357503-chr10:50357925..50361172,3	K562	blood:
2	chr10:50360501..50363437-chr10:50365924..50369669,5	K562	blood:
3	chr10:50322474..50324170-chr10:50359110..50361723,2	K562	blood:
4	chr10:50358426..50360666-chr10:50372410..50375514,3	K562	blood:
5	chr10:50358962..50361872-chr10:50363611..50365233,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000204161	Chromatin interaction
ENSG00000165633	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs11100989	0.88[ASN][1000 genomes]
rs11100990	0.88[ASN][1000 genomes]
rs12240534	0.84[ASN][1000 genomes]
rs12255055	0.84[ASN][1000 genomes]
rs12267388	0.88[ASN][1000 genomes]
rs12765281	0.95[ASN][1000 genomes]
rs12776553	0.85[ASN][1000 genomes]
rs12777282	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17701186	0.95[ASN][1000 genomes]
rs17773851	0.94[ASN][1000 genomes]
rs17782691	0.81[EUR][1000 genomes]
rs17782733	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1986725	0.99[ASN][1000 genomes]
rs2003044	0.91[ASN][1000 genomes]
rs2490838	0.99[ASN][1000 genomes]
rs2725179	0.96[ASN][1000 genomes]
rs2725181	0.96[ASN][1000 genomes]
rs2725184	0.96[ASN][1000 genomes]
rs2725185	0.99[ASN][1000 genomes]
rs2725190	0.99[ASN][1000 genomes]
rs2725194	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2804928	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2804930	0.82[ASN][1000 genomes]
rs2804931	0.87[ASN][1000 genomes]
rs2804932	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2804934	0.92[ASN][1000 genomes]
rs2804937	1.00[ASN][1000 genomes]
rs2804939	0.99[ASN][1000 genomes]
rs2804940	0.99[ASN][1000 genomes]
rs34056748	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34062275	0.95[ASN][1000 genomes]
rs34110351	0.95[ASN][1000 genomes]
rs34436721	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34467986	0.95[ASN][1000 genomes]
rs34589684	0.95[ASN][1000 genomes]
rs34786393	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35007047	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35285557	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35586957	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35666409	0.85[ASN][1000 genomes]
rs4073138	0.96[ASN][1000 genomes]
rs4073139	0.96[ASN][1000 genomes]
rs4073711	0.84[ASN][1000 genomes]
rs4298825	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4350286	0.90[ASN][1000 genomes]
rs4364979	0.85[ASN][1000 genomes]
rs4488117	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4495812	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4497320	0.87[ASN][1000 genomes]
rs4644582	0.85[ASN][1000 genomes]
rs55947405	0.96[ASN][1000 genomes]
rs58893558	0.91[ASN][1000 genomes]
rs67269950	0.96[ASN][1000 genomes]
rs7081243	0.95[ASN][1000 genomes]
rs7100655	0.95[ASN][1000 genomes]
rs7910476	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50354400-50362000	Weak transcription	K562	blood
2	chr10:50358400-50361600	Weak transcription	HSMMtube	muscle
3	chr10:50358600-50361400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr10:50358800-50362000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr10:50359000-50361200	Weak transcription	Psoas Muscle	Psoas
6	chr10:50359000-50382200	Weak transcription	Left Ventricle	heart
7	chr10:50359200-50362000	Weak transcription	HSMM	muscle
8	chr10:50359200-50363600	Weak transcription	Adipose Nuclei	Adipose
9	chr10:50359200-50375400	Weak transcription	Right Atrium	heart
10	chr10:50359400-50361400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr10:50359400-50364600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr10:50359400-50365200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr10:50359400-50373400	Weak transcription	Right Ventricle	heart
14	chr10:50359400-50374000	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr10:50359600-50362600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr10:50359600-50364600	Weak transcription	Fetal Thymus	thymus
17	chr10:50359800-50361400	Weak transcription	NHDF-Ad	bronchial
18	chr10:50360000-50361400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr10:50360400-50360600	Enhancers	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links