Variant report

Variant	rs2490838
Chromosome Location	chr10:50357198-50357199
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50355645..50357503-chr10:50357925..50361172,3	K562	blood:

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs11100989	0.89[ASN][1000 genomes]
rs11100990	0.89[ASN][1000 genomes]
rs12240534	0.85[ASN][1000 genomes]
rs12255055	0.85[ASN][1000 genomes]
rs12256777	0.81[EUR][1000 genomes]
rs12257242	0.85[EUR][1000 genomes]
rs12261297	0.82[EUR][1000 genomes]
rs12267388	0.89[ASN][1000 genomes]
rs12765281	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12769361	0.85[EUR][1000 genomes]
rs12776460	0.85[EUR][1000 genomes]
rs12776553	0.86[ASN][1000 genomes]
rs17011744	0.81[EUR][1000 genomes]
rs17011746	0.81[EUR][1000 genomes]
rs17011757	0.82[EUR][1000 genomes]
rs17700872	0.85[EUR][1000 genomes]
rs17701186	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17773851	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17782733	0.85[ASN][1000 genomes]
rs1986725	0.98[ASN][1000 genomes]
rs2003044	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2725179	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2725181	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2725184	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2725185	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2725190	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2725194	0.81[ASN][1000 genomes]
rs2804928	0.81[ASN][1000 genomes]
rs2804930	0.82[ASN][1000 genomes]
rs2804931	0.86[ASN][1000 genomes]
rs2804932	0.83[ASN][1000 genomes]
rs2804934	0.91[ASN][1000 genomes]
rs2804937	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2804939	0.98[ASN][1000 genomes]
rs2804940	0.98[ASN][1000 genomes]
rs2804941	0.99[ASN][1000 genomes]
rs34056748	0.91[ASN][1000 genomes]
rs34062275	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34110351	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34289781	0.84[EUR][1000 genomes]
rs34364659	0.85[EUR][1000 genomes]
rs34436721	0.97[ASN][1000 genomes]
rs34467986	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34574986	0.85[EUR][1000 genomes]
rs34589684	0.96[ASN][1000 genomes]
rs34640094	0.85[EUR][1000 genomes]
rs34786393	0.91[ASN][1000 genomes]
rs34878380	0.85[EUR][1000 genomes]
rs35007047	0.89[ASN][1000 genomes]
rs35285557	0.86[ASN][1000 genomes]
rs35341824	0.81[EUR][1000 genomes]
rs35666409	0.86[ASN][1000 genomes]
rs35922675	0.85[EUR][1000 genomes]
rs4073138	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4073139	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4073711	0.84[ASN][1000 genomes]
rs4350286	0.91[ASN][1000 genomes]
rs4364979	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4400713	0.81[EUR][1000 genomes]
rs4445564	0.83[EUR][1000 genomes]
rs4495812	1.00[ASN][1000 genomes]
rs4497320	0.88[ASN][1000 genomes]
rs4508127	0.82[EUR][1000 genomes]
rs4600129	0.82[EUR][1000 genomes]
rs4644582	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55947405	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56291725	0.85[EUR][1000 genomes]
rs58154726	0.84[EUR][1000 genomes]
rs58893558	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67269950	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs68065270	0.84[EUR][1000 genomes]
rs7081243	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7085823	0.81[EUR][1000 genomes]
rs7100655	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72785015	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50343000-50357800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:50349600-50357200	Weak transcription	HSMM	muscle
3	chr10:50354400-50358000	Weak transcription	NHDF-Ad	bronchial
4	chr10:50354400-50362000	Weak transcription	K562	blood
5	chr10:50356400-50359200	Enhancers	Fetal Stomach	stomach
6	chr10:50356800-50358400	Enhancers	HSMMtube	muscle
7	chr10:50357000-50357200	Enhancers	Fetal Muscle Trunk	muscle
8	chr10:50357000-50358000	Enhancers	Fetal Lung	lung
9	chr10:50357000-50359600	Enhancers	Fetal Muscle Leg	muscle

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