Variant report

Variant	rs2804937
Chromosome Location	chr10:50365667-50365668
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:50351001..50354708-chr10:50363715..50366252,3	K562	blood:
2	chr10:50364786..50371686-chr10:50371829..50376692,10	K562	blood:
3	chr10:50363975..50366522-chr10:50367488..50370689,4	K562	blood:
4	chr10:50339347..50342012-chr10:50362966..50365728,2	K562	blood:
5	chr10:50343720..50346032-chr10:50362961..50365747,2	K562	blood:

Variant related genes	Relation type
ENSG00000204161	Chromatin interaction
ENSG00000234736	Chromatin interaction

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs11100988	0.93[CHB][hapmap]
rs11100989	0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11100990	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12240534	0.81[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12244666	0.92[CEU][hapmap]
rs12244748	0.91[CEU][hapmap]
rs12253426	0.91[CEU][hapmap]
rs12255055	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12255090	0.95[CEU][hapmap]
rs12256777	0.91[CEU][hapmap]
rs12257242	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs12261297	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs12267388	0.88[ASN][1000 genomes]
rs12765281	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12769361	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs12774293	0.92[CEU][hapmap]
rs12776460	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs12776553	0.85[ASN][1000 genomes]
rs17011757	0.95[CEU][hapmap];0.81[EUR][1000 genomes]
rs17700872	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs17701186	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17773851	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17782733	1.00[CHB][hapmap];0.83[JPT][hapmap];0.85[YRI][hapmap];0.84[ASN][1000 genomes]
rs1986725	0.94[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2003044	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2137912	0.91[CEU][hapmap]
rs2246673	0.92[CEU][hapmap]
rs2264846	0.91[CEU][hapmap]
rs2264847	0.92[CEU][hapmap]
rs2490838	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2725179	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2725181	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2725184	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2725185	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2725190	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2725194	1.00[YRI][hapmap];0.82[ASN][1000 genomes]
rs2804928	0.81[ASN][1000 genomes]
rs2804930	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2804931	0.88[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2804932	0.88[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.84[ASN][1000 genomes]
rs2804934	0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2804939	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2804940	0.99[ASN][1000 genomes]
rs2804941	1.00[ASN][1000 genomes]
rs34056748	0.91[ASN][1000 genomes]
rs34062275	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34110351	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34289781	0.83[EUR][1000 genomes]
rs34364659	0.84[EUR][1000 genomes]
rs34436721	0.96[ASN][1000 genomes]
rs34467986	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34574986	0.84[EUR][1000 genomes]
rs34589684	0.95[ASN][1000 genomes]
rs34640094	0.84[EUR][1000 genomes]
rs34786393	0.91[ASN][1000 genomes]
rs34878380	0.84[EUR][1000 genomes]
rs35007047	0.88[ASN][1000 genomes]
rs35285557	0.85[ASN][1000 genomes]
rs35666409	0.85[ASN][1000 genomes]
rs35922675	0.84[EUR][1000 genomes]
rs4073138	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4073139	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4073711	0.84[ASN][1000 genomes]
rs4073712	1.00[CHB][hapmap]
rs4344406	0.94[CHB][hapmap]
rs4350286	0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4364979	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4400713	0.91[CEU][hapmap]
rs4402204	0.92[CEU][hapmap]
rs4417190	0.94[CHB][hapmap]
rs4445564	0.95[CEU][hapmap];0.81[EUR][1000 genomes]
rs4495812	0.99[ASN][1000 genomes]
rs4497320	0.87[ASN][1000 genomes]
rs4508127	0.95[CEU][hapmap];0.81[EUR][1000 genomes]
rs4558091	1.00[CHB][hapmap]
rs4600129	0.81[EUR][1000 genomes]
rs4620641	1.00[CHB][hapmap]
rs4644582	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4838446	1.00[CHB][hapmap]
rs4838447	0.88[CHB][hapmap]
rs55947405	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56291725	0.84[EUR][1000 genomes]
rs58154726	0.83[EUR][1000 genomes]
rs58893558	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67269950	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs68065270	0.83[EUR][1000 genomes]
rs7072243	1.00[CHB][hapmap]
rs7081243	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7085823	0.91[CEU][hapmap]
rs7100655	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72785015	0.84[EUR][1000 genomes]
rs9804403	0.91[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50359000-50382200	Weak transcription	Left Ventricle	heart
2	chr10:50359200-50375400	Weak transcription	Right Atrium	heart
3	chr10:50359400-50373400	Weak transcription	Right Ventricle	heart
4	chr10:50359400-50374000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr10:50362200-50370600	Weak transcription	Spleen	Spleen
6	chr10:50362400-50380600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr10:50364600-50365800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr10:50364800-50365800	Enhancers	K562	blood
9	chr10:50365200-50365800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr10:50365200-50367600	Enhancers	Dnd41	blood
11	chr10:50365200-50368600	Weak transcription	Adipose Nuclei	Adipose
12	chr10:50365400-50366400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr10:50365400-50366400	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr10:50365400-50374800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr10:50365400-50374800	Weak transcription	Lung	lung
16	chr10:50365600-50366200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr10:50365600-50369400	Weak transcription	Fetal Thymus	thymus

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