Variant report

Variant	rs17782733
Chromosome Location	chr10:50319628-50319629
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50318764..50321622-chr10:50328764..50331472,2	K562	blood:

Variant related genes	Relation type
ENSG00000234736	Chromatin interaction

Extended variants
information (count: 110 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:104)

rs_ID	r²[population]
rs10508910	0.85[CEU][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11100988	0.92[CHB][hapmap];0.81[ASN][1000 genomes]
rs11100989	0.94[CHB][hapmap];0.83[JPT][hapmap];0.97[ASN][1000 genomes]
rs11100990	1.00[CHB][hapmap];0.84[CHD][hapmap];0.91[JPT][hapmap];0.97[ASN][1000 genomes]
rs12240534	0.94[CHB][hapmap];0.83[JPT][hapmap];1.00[ASN][1000 genomes]
rs12255055	1.00[CHB][hapmap];0.94[CHD][hapmap];0.90[JPT][hapmap];1.00[ASN][1000 genomes]
rs12267388	0.97[ASN][1000 genomes]
rs12762834	0.85[CEU][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12762859	0.85[CEU][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12763447	0.85[CEU][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12765281	1.00[CHB][hapmap];0.83[JPT][hapmap];0.85[YRI][hapmap];0.86[ASN][1000 genomes]
rs12772732	0.80[AMR][1000 genomes]
rs12774117	0.85[CEU][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12776553	0.99[ASN][1000 genomes]
rs12777282	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17175928	0.85[CEU][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17701186	0.86[ASN][1000 genomes]
rs17773851	1.00[CHB][hapmap];0.82[JPT][hapmap];0.85[YRI][hapmap];0.85[ASN][1000 genomes]
rs17782595	0.85[CEU][hapmap];0.89[AMR][1000 genomes]
rs17782649	0.85[CEU][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17782673	0.85[CEU][hapmap];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17782691	0.85[CEU][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1986725	0.94[CHB][hapmap];0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs2003044	0.88[CHB][hapmap];0.91[JPT][hapmap];0.85[YRI][hapmap]
rs2137914	0.85[CEU][hapmap]
rs2246937	0.85[CEU][hapmap]
rs2490838	0.85[ASN][1000 genomes]
rs2725179	0.94[CHB][hapmap];0.83[JPT][hapmap];0.85[YRI][hapmap];0.81[ASN][1000 genomes]
rs2725181	0.94[CHB][hapmap];0.91[JPT][hapmap];0.85[YRI][hapmap];0.81[ASN][1000 genomes]
rs2725184	0.84[ASN][1000 genomes]
rs2725185	0.85[ASN][1000 genomes]
rs2725190	0.85[ASN][1000 genomes]
rs2725194	1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs2804928	0.80[AFR][1000 genomes]
rs2804930	0.91[JPT][hapmap]
rs2804931	0.88[CHB][hapmap];0.91[JPT][hapmap]
rs2804932	0.85[CEU][hapmap];0.88[CHB][hapmap];0.91[JPT][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2804934	0.94[CHB][hapmap];0.91[JPT][hapmap]
rs2804937	1.00[CHB][hapmap];0.83[JPT][hapmap];0.85[YRI][hapmap];0.84[ASN][1000 genomes]
rs2804939	1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs2804940	0.84[ASN][1000 genomes]
rs2804941	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34056748	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34062275	0.86[ASN][1000 genomes]
rs34110351	0.86[ASN][1000 genomes]
rs34347666	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34373855	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34436721	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34467986	0.86[ASN][1000 genomes]
rs34589684	0.86[ASN][1000 genomes]
rs34712064	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34786393	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35007047	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35012082	0.84[AMR][1000 genomes]
rs35285557	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35311796	0.89[AMR][1000 genomes]
rs35496464	0.87[AMR][1000 genomes]
rs35586957	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35621290	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35666409	0.99[ASN][1000 genomes]
rs36015645	0.83[ASN][1000 genomes]
rs3924984	0.85[CEU][hapmap]
rs4012666	0.85[CEU][hapmap];0.85[AMR][1000 genomes]
rs4073138	0.84[ASN][1000 genomes]
rs4073139	0.84[ASN][1000 genomes]
rs4073711	0.99[ASN][1000 genomes]
rs4073712	1.00[CHB][hapmap]
rs4293050	0.85[CEU][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes]
rs4298825	1.00[CEU][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4310535	0.85[CEU][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4342944	0.85[CEU][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4344406	0.94[CHB][hapmap];0.84[ASN][1000 genomes]
rs4350286	0.94[CHB][hapmap];0.82[JPT][hapmap];0.95[ASN][1000 genomes]
rs4364979	0.99[ASN][1000 genomes]
rs4412679	0.81[ASN][1000 genomes]
rs4417190	0.94[CHB][hapmap]
rs4468264	0.85[CEU][hapmap]
rs4483510	0.82[CEU][hapmap];0.88[AMR][1000 genomes]
rs4488117	1.00[CEU][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4495812	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4497319	0.85[CEU][hapmap];0.84[TSI][hapmap]
rs4497320	0.96[ASN][1000 genomes]
rs4532948	0.81[ASN][1000 genomes]
rs4550151	0.85[CEU][hapmap];0.84[TSI][hapmap]
rs4558091	1.00[CHB][hapmap];0.89[CHD][hapmap];0.83[ASN][1000 genomes]
rs4559606	0.83[ASN][1000 genomes]
rs4620641	1.00[CHB][hapmap];0.82[CHD][hapmap]
rs4644582	0.99[ASN][1000 genomes]
rs4838365	0.83[ASN][1000 genomes]
rs4838367	0.83[ASN][1000 genomes]
rs4838446	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs4838447	0.87[CHB][hapmap]
rs55947405	0.84[ASN][1000 genomes]
rs58893558	0.94[ASN][1000 genomes]
rs67269950	0.84[ASN][1000 genomes]
rs7072243	1.00[CHB][hapmap];0.89[CHD][hapmap];0.84[ASN][1000 genomes]
rs7081243	0.86[ASN][1000 genomes]
rs7084112	0.85[CEU][hapmap];0.84[TSI][hapmap]
rs7098134	0.85[CEU][hapmap]
rs7100655	1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[YRI][hapmap];0.86[ASN][1000 genomes]
rs71500261	0.83[AMR][1000 genomes]
rs71500264	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs71500265	0.80[AMR][1000 genomes]
rs7904272	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831866	chr10:50165180-50335276	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
2	esv2761593	chr10:50276812-50336129	Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	esv1824894	chr10:50309905-50340304	Genic enhancers Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
6	nsv550817	chr10:50319387-50328494	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50312200-50320400	Enhancers	Colon Smooth Muscle	Colon
2	chr10:50312600-50322800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:50314400-50321400	Genic enhancers	Fetal Stomach	stomach
4	chr10:50314600-50319800	Enhancers	Lung	lung
5	chr10:50314600-50320200	Enhancers	Right Atrium	heart
6	chr10:50314600-50321000	Genic enhancers	Fetal Muscle Leg	muscle
7	chr10:50315000-50322600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr10:50315400-50323000	Weak transcription	Pancreas	Pancrea
9	chr10:50315600-50323000	Weak transcription	Spleen	Spleen
10	chr10:50315800-50320600	Enhancers	Fetal Lung	lung
11	chr10:50315800-50322200	Enhancers	Left Ventricle	heart
12	chr10:50315800-50322600	Weak transcription	Liver	Liver
13	chr10:50316000-50321200	Enhancers	Right Ventricle	heart
14	chr10:50316000-50321600	Enhancers	Ovary	ovary
15	chr10:50316600-50320200	Weak transcription	Fetal Thymus	thymus
16	chr10:50317000-50320400	Enhancers	NHDF-Ad	bronchial
17	chr10:50317200-50320600	Enhancers	NHLF	lung
18	chr10:50317200-50321000	Enhancers	Adipose Nuclei	Adipose
19	chr10:50317200-50321600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr10:50317200-50321600	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr10:50317400-50322000	Weak transcription	K562	blood
22	chr10:50318000-50320600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr10:50318000-50321800	Enhancers	HSMMtube	muscle
24	chr10:50318000-50322200	Weak transcription	Brain Anterior Caudate	brain
25	chr10:50318200-50319800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr10:50318200-50322800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr10:50318600-50320000	Weak transcription	Brain Cingulate Gyrus	brain
28	chr10:50318600-50320400	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
29	chr10:50318600-50321000	Genic enhancers	Fetal Muscle Trunk	muscle
30	chr10:50318600-50321400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr10:50318600-50321400	Weak transcription	Osteobl	bone
32	chr10:50318600-50321800	Weak transcription	Fetal Heart	heart
33	chr10:50318600-50322200	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr10:50318800-50319800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr10:50318800-50321000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr10:50319000-50320400	Enhancers	Placenta	Placenta
37	chr10:50319000-50320800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr10:50319000-50321400	Weak transcription	HSMM	muscle
39	chr10:50319000-50322000	Weak transcription	Rectal Smooth Muscle	rectum
40	chr10:50319000-50322800	Weak transcription	Esophagus	oesophagus
41	chr10:50319200-50321800	Weak transcription	Brain Substantia Nigra	brain
42	chr10:50319400-50320400	Enhancers	Aorta	Aorta
43	chr10:50319400-50321600	Weak transcription	Brain Angular Gyrus	brain
44	chr10:50319600-50320200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr10:50319600-50320200	Enhancers	Duodenum Smooth Muscle	Duodenum
46	chr10:50319600-50320400	Enhancers	Colonic Mucosa	Colon
47	chr10:50319600-50321600	Enhancers	Stomach Smooth Muscle	stomach
48	chr10:50319600-50322000	Weak transcription	Brain Hippocampus Middle	brain
49	chr10:50319600-50322600	Weak transcription	Psoas Muscle	Psoas

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links