Variant report

Variant	rs35012082
Chromosome Location	chr10:50312567-50312568
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50304348..50306100-chr10:50311387..50313034,2	K562	blood:
2	chr10:50308627..50310723-chr10:50311028..50313744,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10508910	0.80[AMR][1000 genomes]
rs12774117	0.80[AMR][1000 genomes]
rs12777282	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17782649	0.80[AMR][1000 genomes]
rs17782733	0.84[AMR][1000 genomes]
rs34056748	0.84[AMR][1000 genomes]
rs34373855	0.80[AMR][1000 genomes]
rs34436721	0.80[AMR][1000 genomes]
rs34712064	0.80[AMR][1000 genomes]
rs34786393	0.80[AMR][1000 genomes]
rs35007047	0.84[AMR][1000 genomes]
rs35086974	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35285557	0.80[AMR][1000 genomes]
rs35586957	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4298825	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4342944	0.80[AMR][1000 genomes]
rs4488117	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs71500264	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831866	chr10:50165180-50335276	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
2	esv2761593	chr10:50276812-50336129	Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	esv1824894	chr10:50309905-50340304	Genic enhancers Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50290800-50315400	Weak transcription	Fetal Intestine Small	intestine
2	chr10:50298600-50314400	Weak transcription	NHDF-Ad	bronchial
3	chr10:50299000-50312600	Weak transcription	Fetal Lung	lung
4	chr10:50299600-50314400	Weak transcription	HSMMtube	muscle
5	chr10:50300800-50314600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:50303200-50314600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr10:50303400-50313600	Weak transcription	Brain Substantia Nigra	brain
8	chr10:50303400-50314400	Weak transcription	Brain Anterior Caudate	brain
9	chr10:50303600-50314400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr10:50303600-50314400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr10:50303800-50314600	Weak transcription	Esophagus	oesophagus
12	chr10:50304000-50314400	Weak transcription	Brain Angular Gyrus	brain
13	chr10:50304600-50314400	Weak transcription	Liver	Liver
14	chr10:50304800-50317600	Weak transcription	Fetal Heart	heart
15	chr10:50305400-50314400	Weak transcription	NHLF	lung
16	chr10:50305800-50313600	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr10:50306400-50314600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr10:50307400-50314200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr10:50307400-50314400	Weak transcription	Stomach Smooth Muscle	stomach
20	chr10:50310000-50312600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr10:50310200-50314400	Weak transcription	Adipose Nuclei	Adipose
22	chr10:50310600-50313200	Enhancers	Brain Hippocampus Middle	brain
23	chr10:50310800-50314400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr10:50311600-50312600	Enhancers	K562	blood
25	chr10:50311600-50313600	Enhancers	Right Atrium	heart
26	chr10:50311800-50312800	Enhancers	Aorta	Aorta
27	chr10:50311800-50312800	Genic enhancers	Fetal Muscle Trunk	muscle
28	chr10:50311800-50317800	Weak transcription	Fetal Intestine Large	intestine
29	chr10:50312000-50312600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr10:50312000-50312800	Enhancers	Left Ventricle	heart
31	chr10:50312000-50314400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr10:50312200-50320400	Enhancers	Colon Smooth Muscle	Colon
33	chr10:50312400-50312600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr10:50312400-50312600	Enhancers	Duodenum Mucosa	Duodenum
35	chr10:50312400-50312600	Enhancers	Lung	lung
36	chr10:50312400-50312800	Genic enhancers	Fetal Muscle Leg	muscle
37	chr10:50312400-50312800	Genic enhancers	Fetal Stomach	stomach
38	chr10:50312400-50313400	Enhancers	Right Ventricle	heart
39	chr10:50312400-50313600	Enhancers	Ovary	ovary
40	chr10:50312400-50315600	Enhancers	Brain Germinal Matrix	brain
41	chr10:50312400-50316200	Enhancers	Skeletal Muscle Female	skeletal muscle

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