Variant report

Variant	rs34373855
Chromosome Location	chr10:50291933-50291934
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50287416..50289075-chr10:50291865..50294530,2	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10508910	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12762834	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12762859	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12763447	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12770345	0.84[AMR][1000 genomes]
rs12772732	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12774117	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12776211	0.84[AMR][1000 genomes]
rs12777282	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17175928	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17782595	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17782649	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17782673	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17782691	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17782733	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2137914	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2246937	0.92[EUR][1000 genomes]
rs34056748	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34347666	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34436721	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34712064	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34786393	0.87[AMR][1000 genomes]
rs35007047	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35012082	0.80[AMR][1000 genomes]
rs35285557	0.87[AMR][1000 genomes]
rs35311796	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35496464	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35586957	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35621290	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3924984	0.92[EUR][1000 genomes]
rs3924985	0.92[EUR][1000 genomes]
rs4012666	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4293050	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4298825	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4310535	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4342944	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4445564	0.93[ASN][1000 genomes]
rs4468264	0.94[EUR][1000 genomes]
rs4483510	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4488117	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4497319	0.94[EUR][1000 genomes]
rs4550151	0.94[EUR][1000 genomes]
rs4617506	0.92[ASN][1000 genomes]
rs7084112	0.93[EUR][1000 genomes]
rs7098134	0.93[EUR][1000 genomes]
rs71500261	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs71500264	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71500265	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7904272	0.94[EUR][1000 genomes]
rs7907959	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831866	chr10:50165180-50335276	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
2	esv2761593	chr10:50276812-50336129	Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50272600-50294200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr10:50283200-50298200	Weak transcription	Spleen	Spleen
3	chr10:50284800-50292400	Enhancers	Liver	Liver
4	chr10:50285200-50292400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr10:50286000-50292400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr10:50287200-50292200	Enhancers	Adipose Nuclei	Adipose
7	chr10:50287200-50292400	Enhancers	Brain Substantia Nigra	brain
8	chr10:50288200-50292000	Enhancers	Fetal Muscle Trunk	muscle
9	chr10:50288200-50292000	Genic enhancers	Fetal Stomach	stomach
10	chr10:50288200-50292200	Enhancers	Colon Smooth Muscle	Colon
11	chr10:50288200-50292200	Enhancers	Left Ventricle	heart
12	chr10:50288200-50292200	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr10:50288200-50293200	Enhancers	Right Ventricle	heart
14	chr10:50288400-50292400	Enhancers	Brain Hippocampus Middle	brain
15	chr10:50288400-50292600	Enhancers	Brain Anterior Caudate	brain
16	chr10:50288400-50292800	Enhancers	Ovary	ovary
17	chr10:50288400-50293600	Enhancers	HSMMtube	muscle
18	chr10:50288600-50292200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
19	chr10:50289000-50292200	Enhancers	Fetal Brain Male	brain
20	chr10:50289000-50294200	Weak transcription	Rectal Smooth Muscle	rectum
21	chr10:50289200-50292200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr10:50289200-50292200	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr10:50289200-50294400	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr10:50289400-50292200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr10:50289400-50294200	Weak transcription	Primary hematopoietic stem cells	blood
26	chr10:50289600-50298800	Weak transcription	Fetal Thymus	thymus
27	chr10:50289800-50292000	Weak transcription	Psoas Muscle	Psoas
28	chr10:50290200-50293000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr10:50290200-50298200	Weak transcription	Colonic Mucosa	Colon
30	chr10:50290400-50292800	Weak transcription	Fetal Intestine Large	intestine
31	chr10:50290400-50295000	Weak transcription	K562	blood
32	chr10:50290800-50292000	Enhancers	Fetal Brain Female	brain
33	chr10:50290800-50292200	Enhancers	Right Atrium	heart
34	chr10:50290800-50292200	Flanking Active TSS	Stomach Smooth Muscle	stomach
35	chr10:50290800-50315400	Weak transcription	Fetal Intestine Small	intestine
36	chr10:50291000-50292200	Enhancers	Aorta	Aorta
37	chr10:50291000-50293400	Genic enhancers	Fetal Muscle Leg	muscle
38	chr10:50291200-50297200	Weak transcription	Lung	lung
39	chr10:50291400-50292000	Bivalent Enhancer	Fetal Lung	lung
40	chr10:50291400-50292200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr10:50291400-50293400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr10:50291400-50293800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr10:50291600-50292400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr10:50291600-50293800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr10:50291600-50294200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr10:50291800-50292200	Enhancers	Brain Angular Gyrus	brain
47	chr10:50291800-50292200	Enhancers	Brain Inferior Temporal Lobe	brain
48	chr10:50291800-50292400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr10:50291800-50292600	Enhancers	Brain Cingulate Gyrus	brain
50	chr10:50291800-50293200	Enhancers	Skeletal Muscle Female	skeletal muscle

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