Variant report

Variant	rs4293050
Chromosome Location	chr10:50266982-50266983
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50261106..50262953-chr10:50265255..50267804,2	MCF-7	breast:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10508910	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.88[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12253763	0.82[MEX][hapmap]
rs12262834	1.00[YRI][hapmap]
rs12762834	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12762859	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12763447	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12770345	0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12770669	0.83[MKK][hapmap]
rs12772732	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12774117	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12776211	0.87[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12777282	0.85[CEU][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17175928	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.88[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17782595	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17782649	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17782673	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17782691	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17782733	0.85[CEU][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes]
rs2137914	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2246937	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2250146	0.94[MEX][hapmap]
rs2804932	0.82[MEX][hapmap];0.91[TSI][hapmap]
rs34056748	0.85[AMR][1000 genomes]
rs34347666	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34373855	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34436721	0.81[AMR][1000 genomes]
rs34712064	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34786393	0.85[AMR][1000 genomes]
rs35007047	0.85[AMR][1000 genomes]
rs35285557	0.85[AMR][1000 genomes]
rs35311796	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35496464	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35586957	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35621290	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3763776	0.83[MKK][hapmap];1.00[YRI][hapmap]
rs3924984	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs3924985	0.86[CEU][hapmap];0.94[EUR][1000 genomes]
rs4012666	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4298825	0.85[CEU][hapmap];0.91[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4310535	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4317904	0.86[CHB][hapmap];0.80[CHD][hapmap]
rs4342944	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4445564	1.00[CHB][hapmap];0.93[CHD][hapmap];0.86[ASN][1000 genomes]
rs4468264	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs4483510	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4488117	0.85[CEU][hapmap];0.91[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4497319	1.00[CEU][hapmap];0.84[MEX][hapmap];0.84[TSI][hapmap];0.93[EUR][1000 genomes]
rs4550151	1.00[CEU][hapmap];0.84[TSI][hapmap];0.93[EUR][1000 genomes]
rs4617506	1.00[ASN][1000 genomes]
rs7082096	0.87[GIH][hapmap];1.00[MEX][hapmap];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7084112	1.00[CEU][hapmap];0.84[MEX][hapmap];0.84[TSI][hapmap];0.91[EUR][1000 genomes]
rs7098134	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs71500261	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs71500264	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71500265	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7904272	0.82[CEU][hapmap];0.93[EUR][1000 genomes]
rs7907959	0.93[EUR][1000 genomes]
rs7912598	0.83[MKK][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831866	chr10:50165180-50335276	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50222800-50279000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr10:50232400-50279200	Weak transcription	Brain Hippocampus Middle	brain
3	chr10:50243800-50278800	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr10:50247000-50282600	Weak transcription	Brain Angular Gyrus	brain
5	chr10:50247800-50271600	Weak transcription	Fetal Intestine Small	intestine
6	chr10:50254400-50278800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr10:50255800-50270200	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr10:50260600-50267800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr10:50261200-50267400	Enhancers	Right Ventricle	heart
10	chr10:50261200-50267600	Enhancers	Left Ventricle	heart
11	chr10:50261200-50267600	Enhancers	Ovary	ovary
12	chr10:50262000-50267600	Genic enhancers	Fetal Muscle Leg	muscle
13	chr10:50262600-50267000	Weak transcription	Lung	lung
14	chr10:50262800-50267400	Enhancers	Adipose Nuclei	Adipose
15	chr10:50262800-50271600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr10:50263000-50267400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr10:50263400-50267600	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr10:50263400-50272200	Weak transcription	Fetal Brain Male	brain
19	chr10:50263800-50267000	Weak transcription	Fetal Lung	lung
20	chr10:50264200-50267200	Genic enhancers	Fetal Muscle Trunk	muscle
21	chr10:50264800-50267000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr10:50264800-50271800	Weak transcription	NHDF-Ad	bronchial
23	chr10:50265400-50267800	Enhancers	Right Atrium	heart
24	chr10:50266000-50267200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr10:50266000-50267600	Genic enhancers	Fetal Stomach	stomach
26	chr10:50266000-50271800	Weak transcription	Stomach Smooth Muscle	stomach
27	chr10:50266200-50267200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr10:50266400-50267000	Enhancers	HSMMtube	muscle
29	chr10:50266400-50267200	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr10:50266400-50267200	Enhancers	NHLF	lung
31	chr10:50266400-50271600	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr10:50266600-50267200	Enhancers	Placenta	Placenta
33	chr10:50266600-50267600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr10:50266600-50267600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr10:50266600-50289400	Weak transcription	Colonic Mucosa	Colon
36	chr10:50266800-50267000	Enhancers	Psoas Muscle	Psoas
37	chr10:50266800-50267400	Enhancers	Aorta	Aorta
38	chr10:50266800-50267400	Enhancers	Sigmoid Colon	Sigmoid Colon
39	chr10:50266800-50278600	Weak transcription	Colon Smooth Muscle	Colon

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