Variant report

Variant	rs17782595
Chromosome Location	chr10:50263094-50263095
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50242711..50245111-chr10:50261545..50265168,4	MCF-7	breast:
2	chr10:50255638..50257367-chr10:50260546..50263382,2	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10508910	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.87[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12762834	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.87[YRI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12762859	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.87[YRI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12763447	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.87[YRI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12770345	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12772732	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12774117	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.87[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12776211	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12777282	0.85[CEU][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17175928	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.87[YRI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17782649	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17782673	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17782691	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.87[YRI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17782733	0.85[CEU][hapmap];0.89[AMR][1000 genomes]
rs2137914	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2246937	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2725194	0.82[YRI][hapmap]
rs34056748	0.89[AMR][1000 genomes]
rs34347666	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34373855	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34436721	0.85[AMR][1000 genomes]
rs34712064	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34786393	0.85[AMR][1000 genomes]
rs35007047	0.89[AMR][1000 genomes]
rs35285557	0.85[AMR][1000 genomes]
rs35311796	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35496464	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35586957	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35621290	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3924984	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs3924985	0.87[CEU][hapmap];0.94[EUR][1000 genomes]
rs4012666	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4293050	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4298825	0.85[CEU][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4310535	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4317904	0.86[CHB][hapmap]
rs4342944	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.87[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4445564	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs4468264	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs4483510	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4488117	0.85[CEU][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4497319	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs4550151	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs4617506	1.00[ASN][1000 genomes]
rs7082096	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7084112	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs7098134	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs71500261	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs71500264	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71500265	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7904272	0.82[CEU][hapmap];0.93[EUR][1000 genomes]
rs7907959	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831866	chr10:50165180-50335276	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50222800-50279000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr10:50232400-50279200	Weak transcription	Brain Hippocampus Middle	brain
3	chr10:50233000-50266000	Weak transcription	Colon Smooth Muscle	Colon
4	chr10:50241600-50263200	Weak transcription	NHLF	lung
5	chr10:50243800-50278800	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr10:50245600-50264200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr10:50247000-50282600	Weak transcription	Brain Angular Gyrus	brain
8	chr10:50247800-50271600	Weak transcription	Fetal Intestine Small	intestine
9	chr10:50254400-50278800	Weak transcription	Rectal Smooth Muscle	rectum
10	chr10:50255800-50270200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr10:50257200-50266800	Weak transcription	Aorta	Aorta
12	chr10:50258200-50265800	Weak transcription	Fetal Kidney	kidney
13	chr10:50259200-50264400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr10:50259800-50264000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr10:50260600-50267800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr10:50260800-50263200	Enhancers	Stomach Smooth Muscle	stomach
17	chr10:50261200-50263600	Enhancers	Psoas Muscle	Psoas
18	chr10:50261200-50264800	Genic enhancers	Fetal Stomach	stomach
19	chr10:50261200-50265000	Enhancers	Right Atrium	heart
20	chr10:50261200-50267400	Enhancers	Right Ventricle	heart
21	chr10:50261200-50267600	Enhancers	Left Ventricle	heart
22	chr10:50261200-50267600	Enhancers	Ovary	ovary
23	chr10:50261400-50263200	Enhancers	Spleen	Spleen
24	chr10:50261400-50264200	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr10:50261600-50263800	Enhancers	Fetal Lung	lung
26	chr10:50261800-50264600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr10:50261800-50264600	Weak transcription	Gastric	stomach
28	chr10:50262000-50263800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr10:50262000-50267600	Genic enhancers	Fetal Muscle Leg	muscle
30	chr10:50262200-50263400	Enhancers	Fetal Brain Male	brain
31	chr10:50262200-50263400	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr10:50262400-50263400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr10:50262600-50263800	Weak transcription	Esophagus	oesophagus
34	chr10:50262600-50266400	Weak transcription	HSMMtube	muscle
35	chr10:50262600-50267000	Weak transcription	Lung	lung
36	chr10:50262800-50267400	Enhancers	Adipose Nuclei	Adipose
37	chr10:50262800-50271600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr10:50263000-50264200	Strong transcription	Fetal Muscle Trunk	muscle
39	chr10:50263000-50264800	Enhancers	NHDF-Ad	bronchial
40	chr10:50263000-50267400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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