Variant report

Variant	rs4129035
Chromosome Location	chr10:50295011-50295012
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12240534	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12246766	0.80[AMR][1000 genomes]
rs12261297	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12269023	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17011757	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2246463	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2250146	0.83[ASN][1000 genomes]
rs2250257	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2250349	0.87[ASN][1000 genomes]
rs2804934	0.81[EUR][1000 genomes]
rs2943253	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2943254	0.83[ASN][1000 genomes]
rs4128908	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4240498	0.97[ASN][1000 genomes]
rs4317903	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4317904	1.00[ASN][1000 genomes]
rs4403731	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4421674	1.00[ASN][1000 genomes]
rs4445564	0.80[AMR][1000 genomes]
rs4508127	0.81[ASN][1000 genomes]
rs4509682	0.80[AMR][1000 genomes]
rs6537493	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6537494	0.97[ASN][1000 genomes]
rs7074818	0.97[ASN][1000 genomes]
rs7093398	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7097933	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7897289	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7906722	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7916825	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831866	chr10:50165180-50335276	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
2	esv2761593	chr10:50276812-50336129	Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50283200-50298200	Weak transcription	Spleen	Spleen
2	chr10:50289600-50298800	Weak transcription	Fetal Thymus	thymus
3	chr10:50290200-50298200	Weak transcription	Colonic Mucosa	Colon
4	chr10:50290800-50315400	Weak transcription	Fetal Intestine Small	intestine
5	chr10:50291200-50297200	Weak transcription	Lung	lung
6	chr10:50291800-50299600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:50292200-50296400	Weak transcription	Right Atrium	heart
8	chr10:50292200-50296600	Weak transcription	Stomach Smooth Muscle	stomach
9	chr10:50292200-50302600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr10:50292200-50311800	Weak transcription	Aorta	Aorta
11	chr10:50293200-50296400	Weak transcription	Right Ventricle	heart
12	chr10:50293200-50297000	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr10:50293400-50296600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr10:50293400-50296600	Weak transcription	Fetal Stomach	stomach
15	chr10:50293400-50296800	Weak transcription	Ovary	ovary
16	chr10:50293400-50312400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr10:50294200-50295600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr10:50294200-50295800	ZNF genes & repeats	Fetal Muscle Leg	muscle
19	chr10:50294400-50295200	ZNF genes & repeats	Fetal Muscle Trunk	muscle
20	chr10:50294400-50295600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr10:50294400-50295800	ZNF genes & repeats	Fetal Lung	lung
22	chr10:50294600-50295200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr10:50294600-50296600	Weak transcription	Left Ventricle	heart
24	chr10:50294800-50302600	Weak transcription	Brain Angular Gyrus	brain
25	chr10:50295000-50295800	ZNF genes & repeats	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links