Variant report

Variant	rs2246238
Chromosome Location	chr10:50260320-50260321
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50259438..50261542-chr17:57920004..57922131,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10219080	0.89[AFR][1000 genomes]
rs11100991	0.82[AMR][1000 genomes]
rs12243870	1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12258104	0.82[AMR][1000 genomes]
rs12258230	1.00[ASW][hapmap];0.83[MKK][hapmap];0.82[AMR][1000 genomes]
rs12268209	0.82[AMR][1000 genomes]
rs1913523	0.91[AMR][1000 genomes]
rs1913525	1.00[MEX][hapmap];0.85[MKK][hapmap];0.91[AMR][1000 genomes]
rs2245271	0.81[AMR][1000 genomes]
rs2254151	0.91[AMR][1000 genomes]
rs2254731	0.91[AMR][1000 genomes]
rs4442460	0.82[AMR][1000 genomes]
rs4483511	0.82[AMR][1000 genomes]
rs7067828	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs7067848	1.00[ASW][hapmap];0.83[MKK][hapmap];0.82[AMR][1000 genomes]
rs7068517	0.82[AMR][1000 genomes]
rs7077339	0.82[AMR][1000 genomes]
rs7083685	0.82[AMR][1000 genomes]
rs7095186	0.82[AMR][1000 genomes]
rs73301000	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73302706	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73302759	0.82[AMR][1000 genomes]
rs73304705	0.82[AMR][1000 genomes]
rs73304711	0.82[AMR][1000 genomes]
rs9804303	0.82[AMR][1000 genomes]
rs9804328	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831866	chr10:50165180-50335276	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50222800-50279000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr10:50232400-50279200	Weak transcription	Brain Hippocampus Middle	brain
3	chr10:50233000-50266000	Weak transcription	Colon Smooth Muscle	Colon
4	chr10:50233800-50261400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr10:50233800-50261400	Weak transcription	Spleen	Spleen
6	chr10:50241600-50263200	Weak transcription	NHLF	lung
7	chr10:50243400-50261200	Weak transcription	Lung	lung
8	chr10:50243800-50278800	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr10:50245600-50264200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr10:50247000-50282600	Weak transcription	Brain Angular Gyrus	brain
11	chr10:50247800-50271600	Weak transcription	Fetal Intestine Small	intestine
12	chr10:50252200-50261200	Weak transcription	Psoas Muscle	Psoas
13	chr10:50254400-50278800	Weak transcription	Rectal Smooth Muscle	rectum
14	chr10:50255400-50261200	Weak transcription	Left Ventricle	heart
15	chr10:50255800-50261200	Weak transcription	Right Ventricle	heart
16	chr10:50255800-50270200	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr10:50257000-50260600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr10:50257200-50260800	Weak transcription	Stomach Smooth Muscle	stomach
19	chr10:50257200-50261600	Weak transcription	HSMMtube	muscle
20	chr10:50257200-50266800	Weak transcription	Aorta	Aorta
21	chr10:50257400-50261200	Enhancers	Fetal Stomach	stomach
22	chr10:50258200-50265800	Weak transcription	Fetal Kidney	kidney
23	chr10:50258800-50261800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr10:50259000-50262200	Weak transcription	Adipose Nuclei	Adipose
25	chr10:50259200-50264400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr10:50259400-50260600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr10:50259400-50261000	Weak transcription	Fetal Muscle Leg	muscle
28	chr10:50259400-50261200	Weak transcription	Ovary	ovary
29	chr10:50259400-50263000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr10:50259400-50263000	Weak transcription	NHDF-Ad	bronchial
31	chr10:50259800-50261200	Weak transcription	Fetal Muscle Trunk	muscle
32	chr10:50259800-50261600	Weak transcription	Fetal Lung	lung
33	chr10:50259800-50264000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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