Variant report

Variant	rs11100991
Chromosome Location	chr10:50329679-50329680
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10219080	0.91[AMR][1000 genomes]
rs12243870	1.00[AMR][1000 genomes]
rs12258104	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12258230	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12268209	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2246238	0.82[AMR][1000 genomes]
rs4442460	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4483511	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56737365	0.91[AMR][1000 genomes]
rs61167870	0.84[AFR][1000 genomes]
rs7067828	0.91[AMR][1000 genomes]
rs7067848	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7068517	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7068519	0.85[AFR][1000 genomes]
rs7077339	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7083685	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7095186	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73302715	0.91[AMR][1000 genomes]
rs73302716	0.91[AMR][1000 genomes]
rs73302759	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73304705	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73304711	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9804303	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9804328	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831866	chr10:50165180-50335276	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
2	esv2761593	chr10:50276812-50336129	Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	esv1824894	chr10:50309905-50340304	Genic enhancers Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
6	esv1818143	chr10:50323229-50332930	Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50324000-50343600	Weak transcription	Right Atrium	heart
2	chr10:50325000-50338600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr10:50325000-50339400	Weak transcription	Ovary	ovary
4	chr10:50327600-50330200	Enhancers	Fetal Thymus	thymus
5	chr10:50329000-50329800	Weak transcription	Thymus	Thymus
6	chr10:50329000-50331800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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