Variant report

Variant	rs11594375
Chromosome Location	chr10:21675902-21675903
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11012680	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs16921796	0.89[ASN][1000 genomes]
rs59781699	0.89[ASN][1000 genomes]
rs72793075	0.85[AFR][1000 genomes]
rs72793079	0.82[AFR][1000 genomes]
rs72793090	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21654000-21676800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:21654200-21681400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:21673600-21677400	Enhancers	Placenta	Placenta
4	chr10:21674400-21676000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr10:21674600-21677600	Enhancers	Placenta Amnion	Placenta Amnion
6	chr10:21674600-21678200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr10:21675000-21681000	Weak transcription	A549	lung
8	chr10:21675400-21676400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr10:21675400-21676600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr10:21675400-21676800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr10:21675400-21676800	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr10:21675600-21676600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr10:21675600-21676800	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr10:21675600-21676800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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