Variant report

Variant	rs72793079
Chromosome Location	chr10:21671064-21671065
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11012680	0.86[EUR][1000 genomes]
rs11594245	0.94[EUR][1000 genomes]
rs11594375	0.82[AFR][1000 genomes]
rs11595231	0.97[EUR][1000 genomes]
rs11597239	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11597707	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12413399	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16921724	0.81[EUR][1000 genomes]
rs16921795	0.82[AFR][1000 genomes]
rs16921796	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs2039029	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34297119	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35841043	1.00[EUR][1000 genomes]
rs55773472	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55953944	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59781699	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs6415965	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7071130	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7079617	0.94[EUR][1000 genomes]
rs7080007	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7081480	0.81[EUR][1000 genomes]
rs7089695	1.00[EUR][1000 genomes]
rs7098870	0.94[EUR][1000 genomes]
rs72793050	0.80[EUR][1000 genomes]
rs72793061	0.94[EUR][1000 genomes]
rs72793067	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72793075	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72793077	0.91[EUR][1000 genomes]
rs72793086	0.84[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs72793090	0.84[EUR][1000 genomes]
rs7893639	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21654000-21676800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:21654200-21681400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:21666200-21672200	Weak transcription	A549	lung
4	chr10:21668800-21674400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr10:21671000-21671200	Enhancers	Placenta	Placenta

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