Variant report

Variant	rs72793077
Chromosome Location	chr10:21664199-21664200
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11012680	0.94[EUR][1000 genomes]
rs11594245	0.97[EUR][1000 genomes]
rs11595231	0.88[EUR][1000 genomes]
rs11597239	0.91[EUR][1000 genomes]
rs11597707	0.91[EUR][1000 genomes]
rs12413399	0.91[EUR][1000 genomes]
rs16921771	1.00[ASN][1000 genomes]
rs16921796	0.82[EUR][1000 genomes]
rs2039029	0.85[EUR][1000 genomes]
rs34297119	0.91[EUR][1000 genomes]
rs35841043	0.91[EUR][1000 genomes]
rs55773472	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55953944	0.91[EUR][1000 genomes]
rs59781699	0.82[EUR][1000 genomes]
rs6415965	0.85[EUR][1000 genomes]
rs7071130	0.85[EUR][1000 genomes]
rs7079617	0.85[EUR][1000 genomes]
rs7080007	0.85[EUR][1000 genomes]
rs7081480	0.89[EUR][1000 genomes]
rs7084906	1.00[ASN][1000 genomes]
rs7089695	0.91[EUR][1000 genomes]
rs7098870	0.85[EUR][1000 genomes]
rs72793061	0.85[EUR][1000 genomes]
rs72793067	0.91[EUR][1000 genomes]
rs72793075	0.91[EUR][1000 genomes]
rs72793079	0.91[EUR][1000 genomes]
rs72793090	0.82[EUR][1000 genomes]
rs7893639	0.85[EUR][1000 genomes]
rs7913490	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21654000-21676800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:21654200-21681400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:21662400-21664200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr10:21662400-21664200	Enhancers	NHDF-Ad	bronchial
5	chr10:21662400-21666000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:21662400-21666200	Enhancers	A549	lung
7	chr10:21662400-21668000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr10:21662400-21668200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr10:21663000-21664600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr10:21664000-21664800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links